SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene1412

Length: 2093 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>inia_v1.0_unigene1412
AGTATCAAGCTTTGTTAATTCATGATAGTTAGTATCTCTATCCCATTTTTCCACTGGTTTCGGGAGAGAGGATAAGGGAGTATCAAGCTTTGTTCATTCATTATTATATATACACATTTCATGCTGCTACTAATGGCAGTTACCCACCACTAAGTCCCCACAGGCAAAGGGTGCTGAAAACTTGTGAAGAAAGCAACAGCAACAGCAATGGCCAGAGGCAGAGGTGGAGGAGGTTTGTCTTATTTGTTGTGCAGGTTCATTAGTTCTACTGTAACACCATCTTCTTCTTCATCAGCTGTTATGAGGTCGCGGGCTTTCTCAAAAGTGGCAATGGTCAGAAACAATACAGTTAGACAATTCGGTTCAGCAGCAGAATCATTAGAAGAGCCTATCCAACCACCTGTGCAAGTAAAGTATAAACAACTTCTGATTGATGGACAGCTTGTTGATGCAGCATCAGGAAAAGAATTTCCAACTATTGATCCTCGAACGGGAGATGTGATTACTTATGTGGCTGAAGGTGATGTTGAAGATGTAAATAGGGCTGTTAAAGCTGCTAGGAAAGCTTTTGATCAGGGTCCTTGGCCCAAAATGACTGCTTATGAAAGGTCATGTATAATGTACCGCTTTGCAGATCTAGCAGAAAAGCACAGTGATGAAATTGCATATCTAGATGCATGGGACGGTGGGAAACCTATTGAGCAAGCACGCAATATTGATGTACCAGTATTGGCAAGGATAATGAGATACTATGCAGGTTGGGCCGATAAGATCCATGGATTAACAGTTCCAGCAGACGGACCTTATAATGTCCACACCTTGCATGAACCTATTGGAGTGGCAGGACAAATTGTTCCTTGGAATTTCCCCATTCCTATGTTTGCTTGGAAAATTGGCCCAGCACTTGCTTGTGGAAATACTGTTGTGTTGAAAACCGCAGAGCAAACACCATTATCTACTCTATATGCTGCAAAGCTTTTTTATGAGGCTGGACTTCCACCAGGTGTTCTGAATATAATTTCAGGATATGGTCCAACAGCGGGCGCAGCTATGGCAAATCACATGGATATTGATAAGATTGCTTTTACAGGATCAACTGAAACAGGCCAAAGTATTCTACAAGCAGCTTCCAGGAGCAACCTGAAGCCAGTGACATTAGAGCTTGGAGGAAAGTCACCATTTATTATATGTGAAGATGCTAATGTTGATGAGGCTGTTGAATATGCACATGTTGCCCTTTTCTTGAACCAGGGCCAATGTTGTGCTGCTGGATCTCGAACTTTTGTACATGAAAGTATTTATGATGAGTTTGTTGAAAAGGCACGCGACCGGGCCTTAAGACGTGTTGTTGGCGATCCTTTTAGAAAAGAAGTTGAACAAGGCCCACAGATAGACCAGGAACAGTTTAACAAAATTTTAAGATTAATTAAAGCTGGCAAAGAAGAAGGTGCGACACTTGTTGCAGGCGGTGAACGGATTGGCAACAGGGGATTCTATATACAACCTACAGTTTTTTCAGATGTTAAGGATGACATGGCCATAGCTAAATATGAAATCTTTGGACCTGTACAAACAATATTGAAGTTCAAAACCTTGGATGAGGTGATACAGCGAGCGAATGCTACTCATTATGGTTTGGCAGCAGGAATTTTCTCAAATAATGTACACACCATCAATACTCTGAGCAGGGCATTGCGGGTGGGGACTGTATGGGTCAACTGTTATTTTGTTTTTGATGCTGCCATTCCTTTTGGAGGCTATAAAATGAGCGGTTTTGGAAGAGAGAAGGGAATATATTGTCTTCAGAATTACTTGCAGGTGAAGTCTGTGGTGTCGACACTAGACAACCCGGCATGGCTTTAGTCTAGTGTATTCACTTCACTATTTGATTTCCCCATCTGTTGAACACTCCTCCAGACAGGATCAACGTTTTGTGCAATGTTTGAATTTCATTATTTTCTTATTTGAGTTCTTTAGGAGTAGATTGCTTGCACGAGATTACTGGTTCAAGACTAAAGATGTCCATACACATTATCAAATCAAATTCCTGAGAATGTTATTTGTGTTATAAATAACTTTCCACCGTTATCCAC

Ace file of the UniGene inia_v1.0_unigene1412 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15204	10/130
SustainPine v2.0	sp_v2.0_unigene20279	39/130
SustainPine v2.0	sp_v2.0_unigene60645	81/130

Source	Descriptions	Term	Type	Identity
AutoFact	aldehyde dehydrogenase [Vitis pseudoreticulata]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	aldehyde dehydrogenase family 2 member mitochondrial-like	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg:

Fln protein: MARGRGGGGLSYLLCRFISSTVTPSSSSSAVMRSRAFSKVAMVRNNTVRQFGSAAESLEEPIQPPVQVKYKQLLIDGQLVDAASGKEFPTIDPRTGDVITYVAEGDVEDVNRAVKAARKAFDQGPWPKMTAYERSCIMYRFADLAEKHSDEIAYLDAWDGGKPIEQARNIDVPVLARIMRYYAGWADKIHGLTVPADGPYNVHTLHEPIGVAGQIVPWNFPIPMFAWKIGPALACGNTVVLKTAEQTPLSTLYAAKLFYEAGLPPGVLNIISGYGPTAGAAMANHMDIDKIAFTGSTETGQSILQAASRSNLKPVTLELGGKSPFIICEDANVDEAVEYAHVALFLNQGQCCAAGSRTFVHESIYDEFVEKARDRALRRVVGDPFRKEVEQGPQIDQEQFNKILRLIKAGKEEGATLVAGGERIGNRGFYIQPTVFSDVKDDMAIAKYEIFGPVQTILKFKTLDEVIQRANATHYGLAAGIFSNNVHTINTLSRALRVGTVWVNCYFVFDAAIPFGGYKMSGFGREKGIYCLQNYLQVKSVVSTLDNPAWL*

Protein Length: 553

Fln nts: AGTATCAAGCTTTGTTAATTCATGATAGTTAGTATCTCTATCCCATTTTTCCACTGGTTTCGGGAGAGAGGATAAGGGAGTATCAAGCTTTGTTCATTCATTATTATATATACACATTTCATGCTGCTACTAATGGCAGTTACCCACCACTAAGTCCCCACAGGCAAAGGGTGCTGAAAACTTGTGAAGAAAGCAACAGCAACAGCA_-_ATGGCCAGAGGCAGAGGTGGAGGAGGTTTGTCTTATTTGTTGTGCAGGTTCATTAGTTCTACTGTAACACCATCTTCTTCTTCATCAGCTGTTATGAGGTCGCGGGCTTTCTCAAAAGTGGCAATGGTCAGAAACAATACAGTTAGACAATTCGGTTCAGCAGCAGAATCATTAGAAGAGCCTATCCAACCACCTGTGCAAGTAAAGTATAAACAACTTCTGATTGATGGACAGCTTGTTGATGCAGCATCAGGAAAAGAATTTCCAACTATTGATCCTCGAACGGGAGATGTGATTACTTATGTGGCTGAAGGTGATGTTGAAGATGTAAATAGGGCTGTTAAAGCTGCTAGGAAAGCTTTTGATCAGGGTCCTTGGCCCAAAATGACTGCTTATGAAAGGTCATGTATAATGTACCGCTTTGCAGATCTAGCAGAAAAGCACAGTGATGAAATTGCATATCTAGATGCATGGGACGGTGGGAAACCTATTGAGCAAGCACGCAATATTGATGTACCAGTATTGGCAAGGATAATGAGATACTATGCAGGTTGGGCCGATAAGATCCATGGATTAACAGTTCCAGCAGACGGACCTTATAATGTCCACACCTTGCATGAACCTATTGGAGTGGCAGGACAAATTGTTCCTTGGAATTTCCCCATTCCTATGTTTGCTTGGAAAATTGGCCCAGCACTTGCTTGTGGAAATACTGTTGTGTTGAAAACCGCAGAGCAAACACCATTATCTACTCTATATGCTGCAAAGCTTTTTTATGAGGCTGGACTTCCACCAGGTGTTCTGAATATAATTTCAGGATATGGTCCAACAGCGGGCGCAGCTATGGCAAATCACATGGATATTGATAAGATTGCTTTTACAGGATCAACTGAAACAGGCCAAAGTATTCTACAAGCAGCTTCCAGGAGCAACCTGAAGCCAGTGACATTAGAGCTTGGAGGAAAGTCACCATTTATTATATGTGAAGATGCTAATGTTGATGAGGCTGTTGAATATGCACATGTTGCCCTTTTCTTGAACCAGGGCCAATGTTGTGCTGCTGGATCTCGAACTTTTGTACATGAAAGTATTTATGATGAGTTTGTTGAAAAGGCACGCGACCGGGCCTTAAGACGTGTTGTTGGCGATCCTTTTAGAAAAGAAGTTGAACAAGGCCCACAGATAGACCAGGAACAGTTTAACAAAATTTTAAGATTAATTAAAGCTGGCAAAGAAGAAGGTGCGACACTTGTTGCAGGCGGTGAACGGATTGGCAACAGGGGATTCTATATACAACCTACAGTTTTTTCAGATGTTAAGGATGACATGGCCATAGCTAAATATGAAATCTTTGGACCTGTACAAACAATATTGAAGTTCAAAACCTTGGATGAGGTGATACAGCGAGCGAATGCTACTCATTATGGTTTGGCAGCAGGAATTTTCTCAAATAATGTACACACCATCAATACTCTGAGCAGGGCATTGCGGGTGGGGACTGTATGGGTCAACTGTTATTTTGTTTTTGATGCTGCCATTCCTTTTGGAGGCTATAAAATGAGCGGTTTTGGAAGAGAGAAGGGAATATATTGTCTTCAGAATTACTTGCAGGTGAAGTCTGTGGTGTCGACACTAGACAACCCGGCATGGCTTTAG___TCTAGTGTATTCACTTCACTATTTGATTTCCCCATCTGTTGAACACTCCTCCAGACAGGATCAACGTTTTGTGCAATGTTTGAATTTCATTATTTTCTTATTTGAGTTCTTTAGGAGTAGATTGCTTGCACGAGATTACTGGTTCAAGACTAAAGATGTCCATACACATTATCAAATCAAATTCCTGAGAATGTTATTTGTGTTATAAATAACTTTCCACCGTTATCCAC

Fln Alignment:

Contig1412___AMVRNNTVRQFGSAAESLEEPIQPPVQVKYKQLLIDGQLVDAASGKEFPTIDPRTGDVITYVAEGDVEDVNRAVKAARKAFDQGPWPKMTAYERSCIMYRFADLAEKHSDEIAYLDAWDGGKPIEQARNIDVPVLARIMRYYAGWADKIHGLTVPADGPYNVHTLHEPIGVAGQIVPWNFPIPMFAWKIGPALACGNTVVLKTAEQTPLSTLYAAKLFYEAGLPPGVLNIISGYGPTAGAAMANHMDIDKIAFTGSTETGQSILQAASRSNLKPVTLELGGKSPFIICEDANVDEAVEYAHVALFLNQGQCCAAGSRTFVHESIYDEFVEKARDRALRRVVGDPFRKEVEQGPQIDQEQFNKILRLIKAGKEEGATLVAGGERIGNRGFYIQPTVFSDVKDDMAIAKYEIFGPVQTILKFKTLDEVIQRANATHYGLAAGIFSNNVHTINTLSRALRVGTVWVNCYFVFDAAIPFGGYKMSGFGREKGIYCLQNYLQVKSVVSTLDNPAWL
A9NUF6________________ASIRNDGIRRLGTAASALEEPIAPPVQVKHTQLLIDGQFVNAASGKTFPTFDPRTGDVIANVAEGDAPDVNRAVKAARKAFDVGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQASLVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNIVSGFGPTAGAAIARHMDIDKVAFTGSTETGKAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKILRYIKAGKESGAKLVTGGDQIGTKGFYIMPTIFSEVQDDMAIATDEIFGPVQSIIKFKTLDEVIKRANASRYGLAAGVFTQNIETANTLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLQNYLQVKAVVTPLKNPAWL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
553	76		23		1.0
654		13		86	0.999973
752	11		88		0.923564
753		11		88	0.923564
773		87		12	0.992554
1441		87		12	0.992554
1498	11		88		0.923564
1532		14		85	0.993533
1552		80		20	0.995493
1649	88		11		0.923564
1652	88		11		0.923564
1753		10		90	0.90298
1884	20		80		0.999996
1996		20		80	0.995493
2007	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain