SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene1331

Length: 1945 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>inia_v1.0_unigene1331
TAAAAGGTGGAGCGTGAAATACCTGTAAAGCACATGGGTTCTGCAGATGTGGGGTTTGCAGCATTTTCAATAGTTGAGCGGAACAGAGGCGCAGGTTCGAATCGCAGTAGAAGTTGAAAGGATACTTGTATAAGTAAATAGTTAGCTGGTCAGGAAGTAAATAGCATTGTTGATGTTCGGCTCCCGAAGGCGATGAAGGAGATGAAGATCAGGGAGAATGCAGATAATAAGGAAATAGTGCCATCAGTTGTGGAGGGAAATGGTACAGAAGCAGGCCATGTAATTTCCACAACCATCGGTGGTCGAGATGGGCAGCCTAAGCAAACCATAAGTTACATGGCAGAGCGTGTGGTCGGTAGCGGGTCTTTTGGAATTGTGTTTCAGGCTAAATGCCTGGAGACAGGCGAGAGTGTGGCTATCAAAAAGGTGTTGCAAGATAAGCGGTATAAAAACAGAGAGTTGCAGATGATGCGTTTTCTAGACCATCCAAATGTGGTTTCCTTGAAGCACTGTTTCTTTTCTACAACCAACAGGGATGAGTTGTATCTGAATCTGGTGTTAGAGTATGTGCCAGAGACTGTTTACAAGGTTGAGAGGCATTATGGTAGGACGAATCACCAGATGCCTGTTCTTTATACAAAGCTCTATACTTATCAGCTCTGCAGAGCATTGGCTTATATCCATGGTGGTTTTGGTATATGTCATAGAGACATCAAGCCACAAAATCTTCTGGTCAATCCTCACACCCACCAGCTTAAAATATGTGACTTTGGCAGCGCAAAAGTTCTGGTTAAGGGTGAACCAAACATATCTTACATTTGCTCAAGGTATTATCGAGCTCCTGAGCTCATATTCGGAGCCACAGAGTATACCACGGCAATTGATATGTGGTCGGCAGGTTGTGTCCTAGCTGAGCTTCTTCTGGGTCAGCCTCTGTTTCCTGGTGAGAGTGCAGTAGACCAGCTTGTGGAGATCATTAAGATCCTTGGGACCCCAACTCGAGAGGAAATTAAATGTATGAATCCCAATTATACAGAGTTCAAGTTTCCCCATATAAAAGCTCACCCTTGGCACAAGGTTTTTCACAAGCGAGTGCCAGCAGACGCAATTGATCTTATCTCTAGGCTGCTTCAGTACTCACCAAATCTACGTTGTGCCCCTTTGGAAGCTTGTGTGCATCCATTTTTTGATGAACTCCGCGATCCTAACACTCGACTGCCAAATGGGCATCCTTTGCCTGCTCTTTTTGACTTCAAGCCAGAGGAATTAAAGGGTGCCACCCTTGAGCTTCTTCGGAAGTTGATTCCAGAGCATGCAAGGAGGCAATGTCCACATCTCGGCCTTTAGATATTGTTGCATATTGGTTATGGTGAAATTCTGGTATCCTTTTTATCCTAAGCTTAAGGAGCCCGAGAATTTTTGATGGCTAGCAAGTGGTGTTCACAGATTGGGGTTCAGAAAGGAAACGGAGCATTTTAAAGTAATGAGATCATTTATCCTTTCATTGGATTGGTTATACTCGAAAATTGCAGATTGGTTTTGCAATCAGTCTAACTATAACACCAAATCCCACAAAGAGTGCAGCCTCTATGTATTAAATTAATGCGAAAGTAGATCTTTTTACAACAATTTTTTAGGTTCTAGCTGGGATCTGGACTTGTAGACAAAGGCACATAAAGCACACTTCAGTTTGAGATTCACTTATGGGTGGTTGGTCCCAATACATTTTTGCCCTAGTTTGAGAGGCTGATACATTAAGCTTCATCTCACACTCCCAGAAAAGTTATGCATGTTTTTTACTGAGCAGCTATTAGCCTATTCAGTATATCTAGAACGAATCGAAGGTGAAGGCATATTGATGTAGCGGCGAGTTCGAAGTATAGAAAAACGACATTGGATCTTGGCAGTTTCAATGACAAGTATGTGAGATACCTTATTCCTTGCT

Ace file of the UniGene inia_v1.0_unigene1331 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6214	7/111
SustainPine v2.0	sp_v2.0_unigene17596	104/111

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TWM5_VITVI	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	91%
Blast2go	hyperosmotic response	GO:0006972	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABL7

Fln msg:

Fln protein: MKEMKIRENADNKEIVPSVVEGNGTEAGHVISTTIGGRDGQPKQTISYMAERVVGSGSFGIVFQAKCLETGESVAIKKVLQDKRYKNRELQMMRFLDHPNVVSLKHCFFSTTNRDELYLNLVLEYVPETVYKVERHYGRTNHQMPVLYTKLYTYQLCRALAYIHGGFGICHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSAGCVLAELLLGQPLFPGESAVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPHIKAHPWHKVFHKRVPADAIDLISRLLQYSPNLRCAPLEACVHPFFDELRDPNTRLPNGHPLPALFDFKPEELKGATLELLRKLIPEHARRQCPHLGL*

Protein Length: 386

Fln nts: TAAAAGGTGGAGCGTGAAATACCTGTAAAGCACATGGGTTCTGCAGATGTGGGGTTTGCAGCATTTTCAATAGTTGAGCGGAACAGAGGCGCAGGTTCGAATCGCAGTAGAAGTTGAAAGGATACTTGTATAAGTAAATAGTTAGCTGGTCAGGAAGTAAATAGCATTGTTGATGTTCGGCTCCCGAAGGCG_-_ATGAAGGAGATGAAGATCAGGGAGAATGCAGATAATAAGGAAATAGTGCCATCAGTTGTGGAGGGAAATGGTACAGAAGCAGGCCATGTAATTTCCACAACCATCGGTGGTCGAGATGGGCAGCCTAAGCAAACCATAAGTTACATGGCAGAGCGTGTGGTCGGTAGCGGGTCTTTTGGAATTGTGTTTCAGGCTAAATGCCTGGAGACAGGCGAGAGTGTGGCTATCAAAAAGGTGTTGCAAGATAAGCGGTATAAAAACAGAGAGTTGCAGATGATGCGTTTTCTAGACCATCCAAATGTGGTTTCCTTGAAGCACTGTTTCTTTTCTACAACCAACAGGGATGAGTTGTATCTGAATCTGGTGTTAGAGTATGTGCCAGAGACTGTTTACAAGGTTGAGAGGCATTATGGTAGGACGAATCACCAGATGCCTGTTCTTTATACAAAGCTCTATACTTATCAGCTCTGCAGAGCATTGGCTTATATCCATGGTGGTTTTGGTATATGTCATAGAGACATCAAGCCACAAAATCTTCTGGTCAATCCTCACACCCACCAGCTTAAAATATGTGACTTTGGCAGCGCAAAAGTTCTGGTTAAGGGTGAACCAAACATATCTTACATTTGCTCAAGGTATTATCGAGCTCCTGAGCTCATATTCGGAGCCACAGAGTATACCACGGCAATTGATATGTGGTCGGCAGGTTGTGTCCTAGCTGAGCTTCTTCTGGGTCAGCCTCTGTTTCCTGGTGAGAGTGCAGTAGACCAGCTTGTGGAGATCATTAAGATCCTTGGGACCCCAACTCGAGAGGAAATTAAATGTATGAATCCCAATTATACAGAGTTCAAGTTTCCCCATATAAAAGCTCACCCTTGGCACAAGGTTTTTCACAAGCGAGTGCCAGCAGACGCAATTGATCTTATCTCTAGGCTGCTTCAGTACTCACCAAATCTACGTTGTGCCCCTTTGGAAGCTTGTGTGCATCCATTTTTTGATGAACTCCGCGATCCTAACACTCGACTGCCAAATGGGCATCCTTTGCCTGCTCTTTTTGACTTCAAGCCAGAGGAATTAAAGGGTGCCACCCTTGAGCTTCTTCGGAAGTTGATTCCAGAGCATGCAAGGAGGCAATGTCCACATCTCGGCCTTTAG___ATATTGTTGCATATTGGTTATGGTGAAATTCTGGTATCCTTTTTATCCTAAGCTTAAGGAGCCCGAGAATTTTTGATGGCTAGCAAGTGGTGTTCACAGATTGGGGTTCAGAAAGGAAACGGAGCATTTTAAAGTAATGAGATCATTTATCCTTTCATTGGATTGGTTATACTCGAAAATTGCAGATTGGTTTTGCAATCAGTCTAACTATAACACCAAATCCCACAAAGAGTGCAGCCTCTATGTATTAAATTAATGCGAAAGTAGATCTTTTTACAACAATTTTTTAGGTTCTAGCTGGGATCTGGACTTGTAGACAAAGGCACATAAAGCACACTTCAGTTTGAGATTCACTTATGGGTGGTTGGTCCCAATACATTTTTGCCCTAGTTTGAGAGGCTGATACATTAAGCTTCATCTCACACTCCCAGAAAAGTTATGCATGTTTTTTACTGAGCAGCTATTAGCCTATTCAGTATATCTAGAACGAATCGAAGGTGAAGGCATATTGATGTAGCGGCGAGTTCGAAGTATAGAAAAACGACATTGGATCTTGGCAGTTTCAATGACAAGTATGTGAGATACCTTATTCCTTGCT

Fln Alignment:

Contig1331___MKEMKIRENADNK--------EIVPSVVEGNGTEAGHVISTTIGGRDGQPKQTISYMAERVVGSGSFGIVFQAKCLETGESVAIKKVLQDKRYKNRELQMMRFLDHPNVVSLKHCFFSTTNRDELYLNLVLEYVPETVYKVERHYGRTNHQMPVLYTKLYTYQLCRALAYIHGGFGICHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSAGCVLAELLLGQPLFPGESAVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPHIKAHPWHKVFHKRVPADAIDLISRLLQYSPNLRCAPLEACVHPFFDELRDPNTRLPNGHPLPALFDFKPEELKGATLELLRKLIPEHARRQCP
D5ABL7________________MKEMKTRENADDKGSFCKKFDEIVPSVVEGNGTEAGHVISTTIGGRDGQPKQTISYMAERVVGSGSFGIVFQAKCLETGESVAIKKVLQDKRYKNRELQMMRFLDHPNVVSLKHCFFSTTNRDELYLNLVLEYVPETVYRVERHYGRTNHQMPVIYTKLYTYQLCRALAYIHGGFGICHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSAGCVLAELLLGQPLFPGESAVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPHIKAHPWHKVFHKRVPAEAIDLISRLLQYSPNLRCAPLEACVHPFFDELRDPNTRLPNGHPLPALFDFKPEELKGATLELLRKLIPEHARRQCP

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1366	66	33			0.997452
1367	33	66			0.997452
1419	16		83		0.994512
1441		16		83	0.994512
1699	80		20		1.0
1796	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain