SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene1157

Length: 1045 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene1157 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26120	3/80
SustainPine v2.0	sp_v2.0_unigene30136	77/80

Source	Descriptions	Term	Type	Identity
AutoFact	lanatoside 15-O-acetylesterase [Digitalis grandiflora]	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	gdsl esterase lipase	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-
Sma3	Lipase, GDSL	IPR001087	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK87

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 247 - 384

Fln protein: RC*GSTELAG*MGARSFLPSADAFDKGIYILEIGGNDFSYGYKNLKQTPSQVKQSILPEVARDVAAAVKELYNEGARTILVKDVGPQGCQPFWLTYFGHSPNDFDRYNCSISYNDAVRYYNGLLKGEVASLQGQLKGAKVIYVNTYDILYDFIANPSRYGFKQTTRACCGVGGKYNYHYAVQCGSSGTIGGHPVKAVSCAYPETYVNWDGVHWTDRANRFLTKQILSGKYFEPAFSIASECDIHAF*

Protein Length: 248

Fln nts: GAAGATGTTAAGGCTCTACAGAGCTAGCTGGTTGAATGGGTGCTCGAAGCTTTCTTCCATCAGCAGATGCATTTGATAAGGGAATCTACATCCTCGAAATAGGAGGCAATGACTTCAGCTACGGGTACAAGAACTTGAAACAAACCCCCAGCCAAGTGAAGCAGAGCATTCTCCCTGAGGTGGCTAGAGATGTCGCAGCAGCTGTCAAGGAGCTATACAATGAAGGGGCCAGAACGATTTTGGTGAAGGACGTGGGGCCTCAAGGCTGCCAGCCCTTCTGGCTCACATATTTTGGCCATTCCCCCAACGATTTCGACCGGTATAACTGCTCTATTTCCTACAACGACGCAGTCCGCTATTACAATGGTTTATTGAAAGGAGAGGTCGCATCCCTGCAAGGCCAGCTTAAGGGCGCCAAAGTCATCTATGTCAATACATACGATATTCTCTACGATTTTATCGCTAATCCCTCCCGATACGGATTCAAGCAAACCACGAGAGCTTGCTGCGGAGTGGGAGGAAAGTATAATTATCACTATGCTGTGCAGTGCGGAAGTTCGGGGACCATCGGTGGGCACCCTGTGAAGGCAGTCTCCTGCGCCTATCCAGAAACGTATGTGAATTGGGACGGAGTTCACTGGACCGACCGAGCGAACAGATTTCTGACCAAGCAGATCCTGAGCGGCAAATACTTTGAGCCTGCATTTTCGATTGCAAGCGAATGTGATATCCACGCATTTTGA___TCATTGTAAAGGCGGCTGATAATAAAACAGTCTGACCCTGGTAGCCTTGAATGCAAAGTTAGATTCTTTTATTTGATAGGCAGTAATGTGGACTTGAGAAACCACAGATGTAACAGAGGCTGTATGCATTCTTTCATTTAATTAAGAGAGGCAGATGCAGCGCTTGCATCTATTTGATCATAAATAGTTCAGATCTCTGCTATATCATTTATTTGATGATGGCTATACTCCATGGAAGTATGAACTCGTTTTAGGGTTCAAAATTTATTCACCAATGCGGTCTCGGCATTTCAGCAGTGGTC

Fln Alignment:

Contig1157___GARSFLPSADAFDKGIYILEIGGNDFSYGYKNLKQTPSQVKQSILPEVARDVAAAVKELYNEGARTILVKDVGPQGCQPFWLTYFGHSPNDFDRYNCSISYNDAVRYYNGLLKGEVASLQGQLKGAKVIYVNTYDILYDFIANPSRYGFKQTTRACCGVGGKYNYHYAVQCGSSGTIGGHPVKAVSCAYPETYVNWDGVHWTDRANRFLTKQILSGKYFEPAFSIASECDIHA
B8LK87________________GAQSYLPSADAFDKGIYILEIGGNDFSYGYKNLKQSPGQVKQSILPKVAKSVAAAVKELYNEGARTILVKDVGPQGCQPFWLTYFGHSSNDFDSHGCSISYNDAVRYYNGLLKGQVGSLRGQLKGANVIYVNTYDILYDFIANPSRYGFKQTTRACCGVGGKYNYDYAVQCGISGTIAGHPVKAVSCAYPETYVNWDGVHWTDRANRILTKQILGGKYFEPAFSIASQCDIHS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
792		94		5	0.998894
843	90		9		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain