SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene1142

Length: 1926 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene1142 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27065	18/238
SustainPine v2.0	sp_v2.0_unigene28258	219/238

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] dbj\|BAF01763.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE82177.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	Peptidase M18	IPR001948	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: your sequence is longer than subject: 459 - 388

Fln protein: MKLLSKLFPNKVTVQMPQEESLIVDWKHQLERDVETLKAKANLASIRNVLSRNNLECDGIDAICIKDQALTNEGAEKIVGWSLSHHLMNNCEPCARDGKLVITSESVCYGLSILQGIQNESRGSKKSLKDVVTENEFEKRLLADVIPPSDIGVTFEDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRESPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDLDAIASMTEGYSGSDLKNLCVTAAYCPIREILEKEKKEKDQAAADGRPPPALSVSDDVRRLNMTDMRYAHEQVCASVSSESANMTELLQWNDLYGEGGSRRKKALSYFM*

Protein Length: 460

Fln nts: AGGTTACATGAACGAAACAAAGAAGCTCCAAAGGCA_-_ATGAAGCTTTTGTCTAAACTCTTTCCTAACAAAGTGACTGTGCAGATGCCTCAGGAAGAATCCCTAATCGTTGATTGGAAACATCAATTAGAGCGTGATGTTGAAACACTTAAAGCAAAGGCAAATCTTGCAAGCATTCGCAATGTTCTATCTCGCAATAATTTGGAATGTGATGGCATTGATGCAATTTGCATTAAGGATCAAGCTCTTACAAATGAAGGTGCAGAGAAAATTGTTGGTTGGTCTTTGAGCCACCATCTTATGAATAATTGTGAACCATGTGCCAGAGATGGAAAGCTCGTCATCACTAGTGAAAGTGTTTGTTATGGGCTGAGCATATTACAGGGAATTCAAAATGAGTCACGAGGTTCCAAAAAGTCACTCAAGGATGTTGTAACTGAGAATGAGTTTGAAAAGAGACTTTTGGCTGATGTGATTCCACCAAGCGACATTGGAGTGACATTTGAGGATATCGGAGCTCTGGAGAATGTGAAAGATACACTGAAAGAGTTGGTGATGCTTCCTTTACAAAGGCCTGAGCTATTTTGTAAAGGTCAACTAACAAAGCCTTGCAAGGGTATCCTTCTATTTGGTCCTCCAGGAACCGGGAAAACAATGCTAGCCAAAGCTGTTGCAACGGAAGCCGGTGCCAATTTTATAAATATTTCAATGTCAAGCATTACATCAAAGTGGTTTGGTGAAGGTGAAAAGTATGTCAAAGCGGTATTTTCATTGGCGAGTAAAATTTCACCAAGTGTCATATTTGTTGACGAGGTTGACAGTATGTTGGGTCGAAGGGAGAGTCCTGGAGAACATGAGGCCATGCGTAAGATGAAAAATGAGTTTATGGTAAACTGGGATGGATTGCGCACTAAGGACAAGGAACGAGTACTAGTTCTTGCTGCAACCAATAGACCCTTTGATCTTGATGAAGCTGTCATCCGAAGACTTCCCCGGAGGTTAATGGTGAATTTGCCAGATACAACAAACAGGGCAAAAATCTTGAAGGTGATACTTGCAAAAGAGGAATTGGCACCAGATGTGGATTTGGATGCAATTGCAAGTATGACAGAGGGATATTCTGGGAGTGACCTCAAGAACTTGTGTGTTACAGCTGCATATTGCCCTATCCGAGAAATTCTGGAAAAAGAAAAGAAGGAAAAAGATCAAGCAGCAGCAGATGGCCGACCTCCACCAGCACTGAGTGTCAGCGATGATGTTCGTCGTTTGAATATGACTGACATGCGATATGCTCATGAACAGGTATGTGCTAGTGTTTCTTCAGAGTCAGCAAATATGACAGAGCTACTTCAGTGGAATGATCTGTATGGTGAAGGAGGTTCAAGGCGGAAAAAGGCACTTAGTTATTTTATGTAG___GCAAGCTATGTACATAAACAGTAATTACAAATTGGCCTGGACTCTTATTTATTACTTATGGAGGTGGTCCTTTGACAGCCTTTTCAAGTGGAATGTATCCAATACCGAAGTTGCCATCTGCATGCCATGTATAATAGTGTTTTGCTTACTGGTTCTCGGAATTTAGAGTCCGAGCTGATTTTTGGACATTTTCGTAGTGGGCTTAGAAGTATTTTTTGTACAAGGATCTCTACGAAGGCACCTGTGCATTGGTTAATTTGACCTGTGAAGCTATTCCGAAACAAGATGTATATGTGAAATATGCTGATTCTACCGAGAATCTATTGGCGTTAGTGTTTGCAATCCTTCTCATGCCATGCCCCAGGTTCTCTTGGTATTATCTAGTCTCAAATCTTTCTTAAAGCAAACGCTAGTGCTTTACACAAGTATAATAGATGCCATATGAGGATCCATGTTATTTTTACTGACTACATTTTTTTTATTAATATAGACAATTAACCCTTTTGGTCTTTT

Fln Alignment:

Contig1142___SKKSLKDVVTENEFEKRLLADVIPPSDIGVTFEDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRESPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDTTNRAKILKVILAKEELAPDVDLDAIASMTEGYSGSDLKNLCVTAAYCPIREIL
D5AE60________________SKRFGRPRVLTNPYEDVIACDVINPDDIDVTFDSIGGLEKVKQELYELVILPLQRPNLFGHCKLLSPPKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQRRS-SEQEAFTNMKTEFMALWDGFTTDQTARVTVLAATNRPEELDEAILRRLPRVFEVGMPSCIQRAKILEVILKGENVEDDIDYDYIASLCEGYSGSDLTDLCKQAAYFPIRELL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
438	14			85	0.999981
501		6		93	0.999453
633		12		87	0.999964
732		16		83	0.994512
1185		12		87	0.999964
1433		88		11	0.923564
1656	85		14		0.993533
1658	87			12	0.992554
1660		12		87	0.992554
1661			12	87	0.992554
1662		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain