SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene1076

Length: 1733 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene1076

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16419	170/170

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor Pur-alpha 1 [Arabidopsis thaliana] sp\|Q9SKZ1.2\|PUR_ARATH RecName: Full=Transcription factor Pur-alpha 1; AltName: Full=Purine-rich single-stranded DNA-binding protein alpha 1 gb\|AAD39465.1\|AF136152_1 PUR alpha-1 [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	0.0	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	PUR-alpha/beta/gamma, DNA/RNA-binding	IPR006628	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADJ0

Fln msg: your sequence is shorter than subject: 274 - 295

Fln protein: MNFVSTQEMENSGGGDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSGSRSTIIVPLAGVVWFVDLFNYYASGNEQDLYSKELQLDTKVSEASVTRNRSTIIVPAGNAKEDGWSAFRDILIEINEASQLLLPPQQASGPSEHLRALSDAVGPGFISSESDQVTSVNGTISDRAMGLGTGDPGGVVMAKVIRAEQKRFFFDLGSNSRGQFLRISEVTGADRSVIILPVSVLEQFHDALGQFVDITRSQGLGGASLPNVRTVASANRRSEY*

Protein Length: 275

Fln nts: CGCTGCTCAGACCCTGGGTTAAAGCTTTTCACGTGGTTACATGAGAAACAAATGTTAAGAACACCCTTAATTTTCACGCTTTACCGCCCTCTCGCTACGATCTCTGCGAATTCTTTCCACGACACTAAGGACGTTTTTTCTCAATGAGGAGAAGCGCGGACTGCAAGTAAGCCATGGCGTCCCCGAGATCCATGGAGGGCCATCGCAGCAATTGGGTTGTTGAATTCAAGGATTTTAGCAATTGGGCATTGATTATTTCAACGAGTGCGTGACGAGTATGGT_-_ATGAATTTTGTATCAACCCAGGAAATGGAAAACTCTGGCGGTGGTGATGTGGAGCTTCTGTGCAAGACACTTCAAGTAGAACACAAGCTTTTTTACTTTGATCTCAAGGAAAACCCACGAGGGCGATACCTGAAAATCTCAGAGAAAACATCTGGATCTCGTTCTACGATAATCGTTCCCCTTGCAGGAGTAGTTTGGTTTGTAGATCTGTTTAATTATTATGCCAGTGGGAATGAACAGGATCTCTACAGTAAGGAGTTGCAGCTAGATACCAAGGTTTCTGAAGCATCCGTGACCCGAAACCGTAGCACCATCATTGTTCCTGCAGGCAATGCAAAAGAGGATGGCTGGTCAGCCTTCAGAGATATTTTGATTGAGATCAATGAGGCTTCGCAGTTGCTGCTTCCACCTCAGCAAGCTTCTGGGCCATCCGAGCACTTGCGAGCATTGTCAGATGCTGTTGGGCCTGGATTCATATCAAGTGAGAGTGATCAGGTTACCTCTGTTAACGGTACAATCAGTGACAGAGCCATGGGTTTAGGTACTGGAGACCCTGGTGGAGTAGTGATGGCAAAAGTTATCAGGGCCGAGCAGAAAAGATTTTTCTTTGATCTGGGGAGCAACTCCAGGGGCCAATTCCTCAGGATTTCAGAGGTGACAGGAGCAGATCGTTCAGTTATAATTCTCCCTGTATCTGTATTAGAACAATTTCATGATGCACTTGGCCAGTTTGTTGACATCACTCGAAGCCAAGGTCTTGGAGGAGCAAGTCTTCCAAATGTCCGCACAGTTGCTTCTGCAAATAGGCGCAGTGAATATTAG___GCCTTTTAACTGAGATTCTTAATATTTGTTTAAAATGTTTTGCTAGGGCTCAATATGAGGATCGCCAAAGATAGTTTTCCTGCAACCTGACTTGGTTGAATCAAATGACCTACATCATGTGTTTGACCTTCATCTCATGCCCTTTAGTGACACTACCTACACAACGCATTCCCTATAACTTTACAGTCTTCAGCCTTATTTTCTGACTGGAAAACCTAAGCAGGCTCCCAATTTTAGTCCTTCCGTTGAGTGATGAGCACTTTGAGATTTTAATCAATAATGTTTGGCAGGATTAATTTCCTGTATTTTTATCTGTTGAAAGCGCTTCATTAAGCTTTACTATTTTATATCGAAGGCCTGCAACTAAGTATGTGCAGAAACTGTGCTACTCAAGAAAAACAACTTCAGTGAGTCATGCTCAAATAATCAACTATCACAAAAAATGGATTTATTTGATTCCGAGGCTCGGAATTTTTCATTTTCCATCAATTGTCAGAGAATAATGGTACAAATTACTTCTACATTCATCTTGTACTAGGATACTGCTTATTTCAGTTAGTGTGGTTTATGAAATTTGGCACTCAATTTTTTCTAAGAATTCATGCAGTCTTTTTGACGCAGTTGGCTAG

Fln Alignment:

Contig1076___VRDEYGMNFVSTQEMENSGGGDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSGSRSTIIVPLAGVVWFVDLFNYYASGNEQDLYSKELQLDTKV----------------SEASVTRNRSTIIVPAGNAKEDGWSAFRDILIEINEASQLLLPPQQASGPSEHLRALSDAVGPGFISSESDQVTSVNGTISDRAMGLGTGDPGGVVMAKVIRAEQKRFFFDLGSNSRGQFLRISEVTGADRSVIILPVSVLEQFHDALGQFVDITRSQGLGGASLPNVRTVASANRRSE
D5ADJ0________________MRDEYGMNFESTQEMENSGGSDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSGSRSTIIVPLAGVVWFVDLFNYYASGNEQDLYSKELQLDTKVFYFDVGENQRGRFLKVSEASVTRNRSTIIVPAGNAKEDGWSAFRDILVEINEASQLLLPPQQPSGPSEHLRALSDAVGPGFISGESVQTTSLNGTMGDRAMGLATGDAGGVVMAKVIRAEQKRFFFDLGSNSRGQFLRISEVTGADRSVIILPVSVLEQFHDALGQFVDITRSQGHAGASLPNVRTVASANRRSE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1465		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain