SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene1015

Length: 2113 nt

UniGene Fasta

>inia_v1.0_unigene1015
CAGAGCATCTGTTGCATGTGGGGCACAGGCTGTGCGCCATTGTTGTGTTTCAAGCTAGGGTCATCGCTGTGATTATAATGATATAAGAAGGGCTGGGGTCTTGAACAAATGCAAGTGCGGATTAGTAGTGTATTGGGTTGTGCAAAGGAAGTGGTGAAGGGTCCATCTAGTTATATATTGGATTGGAGGTGGTGAAGGGCATATATATATAGTTGTGTGTTTTGTTGTAGGCAGTAGGACTGTGGATTACTAGGATTATAGCTCAACTGATTGAAAGACTGTGTTTTACAAAGGTGGACTAATGGGGGAAAAACTTGGGAGTAGAGGTCTGCTCATCCTGCTGGCTTTTGTGTTATGCATCTCTTTTACAGCTGAAGCAATAGGTGTGAACTATGGAAGAATGGGAGACGATCTTCCTCCTCCCAGTGAAGTGGCGAAATTCCTACAGACCACAATGATTGACAAAGTGAAGCTCTTCGATGCAGATCCTGGTGTCTTGCAAGCTTTTGCCAATACAAATATAGGGGTTGTTGTCGCCGTGGCAAATGACCAAATCGCAGCCCTTAACAAACTGCCTGCAGCACAGGATTGGGTGAAGGAAAACGTGGCTCCTTTCGTACCAGCTACAAATATACTTGCCATATCTGTGGGAAATGAGATTCTTTCCACGGGAAACAAAGTGCTAATATCCCAACTCGTCCCTGCCATGCAAAATCTTCATACTGCTCTTGTTGGTGCCTCTCTTGACAAGCAAATCAAGGTCTCTACACCTCATTCGCTTGGTATTCTGTCTGCTTCTGAGCCCCCATCCATAGGAAGGTTCCGTCGAGGCTATGATAGAGTTATTCTAAAGCCATTGTTGAACTTTCTCAGAACAACAGGGGCTCCTTTCATGATCAACCCTTATCCATATTTTGGCTACACAGATAAGACCTTGAACTATGCTCTGTTTAAGCCAAATCAAGGTGTTTTTGACAATAATACTGGAATCACCTATACCAACATGTTCCAAGCTCAGTTGGATGCTGTCTACTCGGCTATGAAACTTTTGGGGTTCTCAGATGTAGATATCGTTGTGGCTGAAACCGGGTGGCCATCAGTTGGAGATCCTGACCAGACAGCTGTCAATGTGGAGAACGCTCTTTCCTACAATGGCAACCTCATCAAACTTGTCAATTCCAATGCAGGAACTCCGTTGATGCCCAACAAAACCTTTGATACTTACATATTTTCTCTCTTCAATGAAGATCTCAAGCCCGGTCCTACTGCAGAGCGCAACTTTGGGCTATTCAAACCAGACATGACCATGGTTTATGATGTTGGGCTCATGAAGTCTGAGAGTGCAACTCCTGCGCCTATTTCTACGGCACCAGTAACACCGGCCACCCCAGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCTGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCGGCACCAGTTACAGGAACAGATAAGTCTTGGTGTGTTGCTAAACCAGATGCAGATCCCAATGTACTCCAAGACAATATAGATTATGCATGTGGGCAGGGAGTGGACTGCAGTGCCATTCAAGCAGGTGGCCAGTGCTTTACTCCAAATACTGTTGTGGCACATGCTACGTATGCAATGAATTCTTATTACCAGCTAACTGGTCGCCACAGCTATGATTGTGATTTTGCTCAAACAGGGGTTCTTACACAGGAGGATCCAAGTTATGGTACGTGTGTATACCCGACAATATAGCGTACAATTCACCTTCAGAAATTTTTTCAAAGCTCATTGAAGAAGCGTATTAGCATCATCGGCTAATATTTAGGATAGCATTTATTTAATTTAACTGTGTTATATAGTACTTGTAATCAGTAACAGCTATAAAGCTGCAGAATTCAGGTTATAGTAGACCATCAGTGGGAATTCTGTCAGTGGTGCTAATTTATTTGTATACGATTTGCCTTTACGTTTTGTAGCGATGTGGGTGTTATCGATGAATATTAAATATATTCATGTAACGCTTGCGAATTATAATTTTACCTGTTTTATAATATTTTCCAACGCTGGCGTCCTTTGAATGGTATCTATCTGAAGGATGTGTTCTGC

Ace file of the UniGene inia_v1.0_unigene1015

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27632	92/300
SustainPine v2.0	sp_v2.0_unigene60293	107/300
SustainPine v2.0	sp_v2.0_unigene60315	101/300

Source	Descriptions	Term	Type	Identity
AutoFact	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana] gb\|AED93290.1\| O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	glucan endo- -beta-glucosidase	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	Peptidase C54	IPR005078	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVN4

Fln msg:

Fln protein: MGEKLGSRGLLILLAFVLCISFTAEAIGVNYGRMGDDLPPPSEVAKFLQTTMIDKVKLFDADPGVLQAFANTNIGVVVAVANDQIAALNKLPAAQDWVKENVAPFVPATNILAISVGNEILSTGNKVLISQLVPAMQNLHTALVGASLDKQIKVSTPHSLGILSASEPPSIGRFRRGYDRVILKPLLNFLRTTGAPFMINPYPYFGYTDKTLNYALFKPNQGVFDNNTGITYTNMFQAQLDAVYSAMKLLGFSDVDIVVAETGWPSVGDPDQTAVNVENALSYNGNLIKLVNSNAGTPLMPNKTFDTYIFSLFNEDLKPGPTAERNFGLFKPDMTMVYDVGLMKSESATPAPISTAPVTPATPAPISTAPVTPTTPAPISTAPVTPTTPAPVTGTDKSWCVAKPDADPNVLQDNIDYACGQGVDCSAIQAGGQCFTPNTVVAHATYAMNSYYQLTGRHSYDCDFAQTGVLTQEDPSYGTCVYPTI*

Protein Length: 487

Fln nts: CAGAGCATCTGTTGCATGTGGGGCACAGGCTGTGCGCCATTGTTGTGTTTCAAGCTAGGGTCATCGCTGTGATTATAATGATATAAGAAGGGCTGGGGTCTTGAACAAATGCAAGTGCGGATTAGTAGTGTATTGGGTTGTGCAAAGGAAGTGGTGAAGGGTCCATCTAGTTATATATTGGATTGGAGGTGGTGAAGGGCATATATATATAGTTGTGTGTTTTGTTGTAGGCAGTAGGACTGTGGATTACTAGGATTATAGCTCAACTGATTGAAAGACTGTGTTTTACAAAGGTGGACTA_-_ATGGGGGAAAAACTTGGGAGTAGAGGTCTGCTCATCCTGCTGGCTTTTGTGTTATGCATCTCTTTTACAGCTGAAGCAATAGGTGTGAACTATGGAAGAATGGGAGACGATCTTCCTCCTCCCAGTGAAGTGGCGAAATTCCTACAGACCACAATGATTGACAAAGTGAAGCTCTTCGATGCAGATCCTGGTGTCTTGCAAGCTTTTGCCAATACAAATATAGGGGTTGTTGTCGCCGTGGCAAATGACCAAATCGCAGCCCTTAACAAACTGCCTGCAGCACAGGATTGGGTGAAGGAAAACGTGGCTCCTTTCGTACCAGCTACAAATATACTTGCCATATCTGTGGGAAATGAGATTCTTTCCACGGGAAACAAAGTGCTAATATCCCAACTCGTCCCTGCCATGCAAAATCTTCATACTGCTCTTGTTGGTGCCTCTCTTGACAAGCAAATCAAGGTCTCTACACCTCATTCGCTTGGTATTCTGTCTGCTTCTGAGCCCCCATCCATAGGAAGGTTCCGTCGAGGCTATGATAGAGTTATTCTAAAGCCATTGTTGAACTTTCTCAGAACAACAGGGGCTCCTTTCATGATCAACCCTTATCCATATTTTGGCTACACAGATAAGACCTTGAACTATGCTCTGTTTAAGCCAAATCAAGGTGTTTTTGACAATAATACTGGAATCACCTATACCAACATGTTCCAAGCTCAGTTGGATGCTGTCTACTCGGCTATGAAACTTTTGGGGTTCTCAGATGTAGATATCGTTGTGGCTGAAACCGGGTGGCCATCAGTTGGAGATCCTGACCAGACAGCTGTCAATGTGGAGAACGCTCTTTCCTACAATGGCAACCTCATCAAACTTGTCAATTCCAATGCAGGAACTCCGTTGATGCCCAACAAAACCTTTGATACTTACATATTTTCTCTCTTCAATGAAGATCTCAAGCCCGGTCCTACTGCAGAGCGCAACTTTGGGCTATTCAAACCAGACATGACCATGGTTTATGATGTTGGGCTCATGAAGTCTGAGAGTGCAACTCCTGCGCCTATTTCTACGGCACCAGTAACACCGGCCACCCCAGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCTGCACCTATTTCTACAGCACCAGTAACACCGACCACCCCGGCACCAGTTACAGGAACAGATAAGTCTTGGTGTGTTGCTAAACCAGATGCAGATCCCAATGTACTCCAAGACAATATAGATTATGCATGTGGGCAGGGAGTGGACTGCAGTGCCATTCAAGCAGGTGGCCAGTGCTTTACTCCAAATACTGTTGTGGCACATGCTACGTATGCAATGAATTCTTATTACCAGCTAACTGGTCGCCACAGCTATGATTGTGATTTTGCTCAAACAGGGGTTCTTACACAGGAGGATCCAAGTTATGGTACGTGTGTATACCCGACAATATAG___CGTACAATTCACCTTCAGAAATTTTTTCAAAGCTCATTGAAGAAGCGTATTAGCATCATCGGCTAATATTTAGGATAGCATTTATTTAATTTAACTGTGTTATATAGTACTTGTAATCAGTAACAGCTATAAAGCTGCAGAATTCAGGTTATAGTAGACCATCAGTGGGAATTCTGTCAGTGGTGCTAATTTATTTGTATACGATTTGCCTTTACGTTTTGTAGCGATGTGGGTGTTATCGATGAATATTAAATATATTCATGTAACGCTTGCGAATTATAATTTTACCTGTTTTATAATATTTTCCAACGCTGGCGTCCTTTGAATGGTATCTATCTGAAGGATGTGTTCTGC

Fln Alignment:

Contig1015___MGEKLGSRGLLILLAFVLCISFTAEAIGVNYGRMGDDLPPPSEVAKFLQTTMIDKVKLFDADPGVLQAFANTNIGVVVAVANDQIAALNKLPAAQDWVKENVAPFVPATNILAISVGNEILSTGNKVLISQLVPAMQNLHTALVGASLDKQIKVSTPHSLGILSASEPPSIGRFRRGYDRVILKPLLNFLRTTGAPFMINPYPYFGYTDKTLNYALFKPNQGVFDNNTGITYTNMFQAQLDAVYSAMKLLGFSDVDIVVAETGWPSVGDPDQTAVNVENALSYNGNLIKLVNSNAGTPLMPNKTFDTYIFSLFNEDLKPGPTAERNFGLFKPDMTMVYDVGLMKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTDKSWCVAKPDADPNVLQDNIDYACGQGVDCSAIQAGGQCFTPNTVVAHATYAMNSYYQLTGRHSYDCDFAQTGVLTQEDPSYGTCVY
A9NVN4________________MGEKLGSRGLFMQLVLVLCIFFTAEAIGVNYGRMGDNLPPPSEVAKFLQTTNIDKVKLFDADPSVLQAFADTNITVVVAVANDEIPALNKLPAAQDWVKKNVAPYVPATNIIAISVGNEILSTGNKVLISQLIPAMQNLHTALVGASLDKQIKVSTPHSLGILAASEPPSIGRFRRGYDRVILKPLLNFLRTTGAPFMINPYPYFGYTDKTLDYALFKPNAGVFDKNTGITYANMFQAQLDAVYSAMKLLGFSDVDIVVAETGWPSVGDPDQTAVNMANALSYNGNLINLVNSNAGTPLMPNKTFDTYIFSLFNEDLKPGPIAERNFGLFKPDMTMVYDVGLLKSESATPAPISTAPVTPTTPAPISTAPVTPTTPAPISTVPVTPTTPAPVTGTDKSWCVAKPDADPKVLQANIDYACGQGVDCSPIQSGGSCFTPNTVVAHATYAMNSYYQLTGRHSYDCDFAQTGFLTQEDPSYGVCVY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
823		14		85	0.993533
837	12			87	0.992554
1570	14		85		0.999981
2080		43		56	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain