SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene725

Length: 1650 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene725 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15992	340/340

Source	Descriptions	Term	Type	Identity
AutoFact	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase 02 n=4 Tax=Vitis vinifera RepID=D0VBC5_VITVI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	2-dehydro-3-deoxyphosphoheptonate aldolase 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	carboxylic acid biosynthetic process	GO:0046394	Biological Process	0.0	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	DAHP synthetase, class II	IPR002480	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF5

Fln msg: your sequence is shorter than subject: 465 - 535

Fln protein: LERGQLEEQKALQLPEYPNKEELESVLQTMETFPPIVFAGEARHLEERIAEAAMGKAFLLQGGDCAESFKEFNAVNIRDTFRILLQMGVVMMFGGQMPVIKVGRMAGQFAKPRSDAFEEKDGVKLPSYRGDNINGDAFDEQSRKPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLNFTEHSEQGDRYRELAHRVDEALGFMGAAGLTVDHPIMTSTEFWTSHECLLLPYEQVLTRQDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPIGIKVSDKMEPRELVRLCEVLNPQNKAGRLTVIVRMGAENMRVKLPHLIRAVRNAGLIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECVGGSGGVTLDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLTSKAIPNFTNQYKLTSSLH*

Protein Length: 466

Fln nts: GCTGGAGCGTGGACAGCTGGAAGAACAAAAGGCTCTGCAGCTCCCCGAGTATCCCAACAAGGAAGAGCTGGAGTCCGTGCTCCAGACAATGGAGACGTTCCCGCCCATTGTGTTTGCTGGTGAGGCCAGACACTTGGAAGAGAGAATTGCAGAAGCTGCGATGGGCAAAGCTTTTCTTCTTCAGGGGGGTGATTGTGCCGAGAGCTTCAAGGAATTCAATGCTGTTAATATCAGGGATACCTTCAGAATTCTGCTGCAGATGGGCGTTGTCATGATGTTTGGTGGGCAGATGCCTGTCATTAAGGTGGGCAGAATGGCAGGGCAGTTTGCTAAGCCCCGATCTGACGCTTTTGAGGAGAAGGATGGAGTGAAGCTGCCAAGCTACCGCGGTGATAATATCAACGGTGATGCCTTCGACGAACAGTCCCGAAAACCCGACCCCCAGCGGATGATCAGAGCCTACTGCCAAGCCGCAGCCACTCTCAATCTCCTCAGAGCCTTCGCCACTGGAGGCTACGCCGCTATGCAGAGAGTTACGCAGTGGAATCTCAATTTCACCGAGCACAGCGAACAAGGCGACAGGTATCGTGAGCTGGCGCACCGCGTGGACGAGGCCCTTGGTTTCATGGGAGCTGCGGGGCTAACGGTCGATCACCCCATTATGACCTCCACGGAGTTCTGGACATCACACGAATGTCTGCTGCTCCCGTACGAGCAGGTGCTGACGAGGCAGGACTCCACGTCAGGGCTCTACTATGACTGCTCCGCACACATGCTGTGGGTTGGGGAGCGGACACGTCAGCTGGATGGTGCCCACGTGGAATTCCTCCGTGGCGTCGCAAATCCAATCGGTATCAAGGTGAGTGACAAGATGGAGCCGAGGGAGCTGGTAAGGCTGTGCGAGGTGCTGAACCCCCAAAATAAGGCGGGCAGGCTGACCGTGATCGTTCGCATGGGCGCGGAAAACATGCGGGTGAAGTTACCGCATCTGATCAGGGCGGTGCGGAATGCGGGATTGATTGTTACGTGGGTTAGCGATCCAATGCACGGCAACACCATCAAGGCTCCTTGCGGTCTCAAGACTCGACCTTTTGACGCAATTCGGGCAGAAGTGCGAGCATTTTTTGATGTTCATGAGCAAGAAGGAAGCCATCCTGGAGGAGTGCATCTAGAGATGACTGGGCAGAATGTGACAGAGTGTGTAGGAGGGTCAGGGGGTGTCACCCTTGATGACTTAAGCTCTCGTTACCACACACATTGTGACCCTCGACTGAATGCTTCTCAATCTTTGGAGTTGGCCTTCATCATTGCAGAGAGGTTGAGGAAGAGGAGGCTCACATCTAAAGCAATTCCAAACTTTACCAACCAATATAAACTCACTTCCTCCCTCCATTAA___AATAAACAATCAAACAAATACCTATCTAGTTTACATTTACAATCTAAGAGATTGGCAAGCAAATACATACTGCATGAAATTTGTATCTTTTTATACACCCATAGATTCCTTATTAGTGGTCATTTGAAAATCAACTCTCAGAAATGGGATGTAAGGTAAGCAATATCCATGTAAAGGTTTCTAATGCATGTTGAGAATAATCCTGTATGGATAATCATTGTGAAATAAAGATGATTTAAATATATTTTTATAAT

Fln Alignment:

Contig725___EEQKALQLPEYPNKEELESVLQTMETFPPIVFAGEARHLEERIAEAAMGKAFLLQGGDCAESFKEFNAVNIRDTFRILLXXXXXXXXXXXMPVIKVGRMAGQFAKPRSDAFEEKDGVKLPSYRGDNINGDAFDEQSRKPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLNFTEHSEQGDRYRELAHRVDEALGFMGAAGLTVDHPIMTSTEFWTSHECLLLPYEQVLTRQDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPIGIKVSDKMEPRELVRLCEVLNPQNKAGRLTVIVRMGAENMRVKLPHLIRAVRNAGLIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECVGGSGGVTLDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLTS
A9NUF5_______________KSKKALQLPDYPNKEELDTVITTLEAFPPLVFAGEARHLQERLAEAALGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVVKVGRMAGQFAKPRSESFEEVNGVKLPSYRGDNINGDTFDEKSRIPDPERMIRAYCQSAATLNLLRAFATGGYAAMQRVNQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFYTSHECLLLPYEEALTRQDSTSGKFYDCSAHMLWIGERTRQLDGSHVEFLRGVANPIGVKVSDKMDPGELVKLVEILNPENKPGRLTVVVRMGAEKLRVKLPHLIRAVRNAGLIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTLDDLSDRYHTHCDPRLNASQALELAFIIAERLRKRRLGS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1430		75		25	0.996473
1447		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain