SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene531

Length: 406 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>inia_v1.0_unigene531
GATAACAAGGATCGAGCACATAAATGCCCTTTCAAGGGATGTGGAGTATTTAGCTTCGAGGGATGCCACAATAATGGGAAGTCGCAATGGGCATGCTCCTATATTTCTTTGGTACACCTTGAACCGGAAAGGTTATCGAGGGTTTCAAAAAGAGGTTCAGAAATGCCTTAGAAATGCACATTATTTGAAAGGTCGATTTCGGTCTGCTGGGATTAGCGCAATGTTAAATGAACTGAGCAGCACTGTAGTATTTGAGAGACCACTGGATGAAACTTTTGTCCGCAGGTGGCAGCTTGCCTGCCAGGGAAACATTGCCCATGTTGTTGTGATGCCAAATGTAACAATAGAGAAGATAGATTGCTTTGTGGACGAGTTGGTTGAGAATCGACCAAAATGGTTTCCAGAT

Ace file of the UniGene inia_v1.0_unigene531 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17081	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Group II plp decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9T448_RICCO	-	-	83%
FL-Next	sp=Histidine decarboxylase; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	52%
Blast2go	histidine decarboxylase	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P54772

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 135 - 413

Fln protein: ITRIEHINALSRDVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKGRFRSAGISAMLNELSSTVVFERPLDETFVRRWQLACQGNIAHVVVMPNVTIEKIDCFVDELVENRPKWFPD

Protein Length: 136

Fln nts: GATAACAAGGATCGAGCACATAAATGCCCTTTCAAGGGATGTGGAGTATTTAGCTTCGAGGGATGCCACAATAATGGGAAGTCGCAATGGGCATGCTCCTATATTTCTTTGGTACACCTTGAACCGGAAAGGTTATCGAGGGTTTCAAAAAGAGGTTCAGAAATGCCTTAGAAATGCACATTATTTGAAAGGTCGATTTCGGTCTGCTGGGATTAGCGCAATGTTAAATGAACTGAGCAGCACTGTAGTATTTGAGAGACCACTGGATGAAACTTTTGTCCGCAGGTGGCAGCTTGCCTGCCAGGGAAACATTGCCCATGTTGTTGTGATGCCAAATGTAACAATAGAGAAGATAGATTGCTTTGTGGACGAGTTGGTTGAGAATCGACCAAAATGGTTTCCAGAT

Fln Alignment:

Contig531___ITRIEHINALSRDVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKGRFRSAGISAMLNELSSTVVFERPLDETFVRRWQLACQGNIAHVVVMPNVTIEKIDCFVDELVENRP-KWFPD
P54772_______________ITRRSYVSTLSK-IEYINSADATISGSRNGFTPIFLWYCLSKKGHARLQQDSITCIENARYLKDRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGITRETIDSFFKDLMQERNYKWYQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain