SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene406

Length: 1073 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene406

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25055	45/79
SustainPine v2.0	sp_v2.0_unigene60527	34/79

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal protein L7	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	60s ribosomal protein l7	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	89%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L30, N-terminal	IPR012988	-	-
Sma3	Ribosomal protein L7, eukaryotic	IPR005998	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-
Sma3		IPR000517	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1J6

Fln msg: Overlapping hits, possible frame ERROR between 259 and 189,

Fln protein: MGEEEAKAIAVVPESVLKKRKRNEEWEKIxxxxxxxxxxxxxxxxxxxxxxxxxYIKEYRDQERDLIRLKREAKLSGGFYVDPEAKLLFIIRIRGINDMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVDKQRIPLTDNAVIEQVLGQYGIICIEDLIHEIITVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINEMIRRMN*

Protein Length: 248

Fln nts: GGTTACGGTGGCCTCCAGACGCTCTGTGACATAGTTGGCTCCAGGTCGAGGTTGTTCACTTCGTCACCTGTCTCTGGCAGCGACACGCCCAGAAAAAGAT_-_ATGGGTGAAGAAGAGGCAAAGGCAATTGCTGTAGTGCCAGAATCTGTGTTGAAGAAGAGGAAAAGAAATGAAGAATGGGAGAAAATAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATATCAAGGAGTACAGGGACCAGGAGCGGGATCTCATCAGATTGAAGCGAGAGGCCAAATTGAGTGGAGGTTTCTATGTTGATCCAGAAGCCAAGCTGCTCTTCATTATCCGTATTCGTGGGATCAATGATATGCATCCAAAGACCCGGAAGATTTTGCAGCTATTGCGTTTGAGGCAGATCTTCAATGGAGTGTTCCTGAAAGTGAACAAAGCAACTGTGAATATGTTGCAGAGGGTTGAACCATATGTGACTTATGGGTATCCTAATTTGAAGAGTATCAGAGAGCTTATTTACAAAAGAGGTTATGGAAAGGTAGACAAGCAGAGGATTCCTTTGACAGACAATGCTGTTATTGAACAGGTTTTGGGTCAGTATGGGATCATCTGTATTGAAGATCTCATTCATGAGATAATTACTGTTGGCCCGAATTTCACAAAGGCAAACAACTTTCTATGGCCATTTAAGCTTAGTGCTCCATCTGGTGGGTTGAAGAAGAAGCGGAACCACTATATTGAGGGTGGAGATGCTGGAAATCGTGAGCTTAAAATTAATGAGATGATTAGGAGGATGAATTAG___TAACATGATTATACTGTTATTTAGCAAAGTTAATTCTAGGTGCCTTTTTAGCATTTGGTCAATCTGTAAAGAGTTGCTTTACGGTTTTAGCATCAAACATCAAAAGGGGTATTCTTAACAATTTTTGGGAGGTAATTATATAGTTTGAGCTGTTCCACGGCGTAGATTTTCAAATACCTTTTGTTAGACACTGAACGTATAGCTAAATAATTTGATTCATATTATTGTGCCTTT

Fln Alignment:

Contig406___MGEEEAKAIAVVPESVLKKRKRNEEWEKIKxxxxxxxxxxxxxxxxxxxxxxxxYIKEYRDQERDLIRLKREAKLSGGFYVDPEAKLLFIIRIRGINDMHPKTRKXXXXXXXXXXFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVDKQRIPLTDNAVIEQVLGQYGXXXXXXXXXXXXTVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINEMIRRMN
A9P1J6_______________MGEEEAKAVAVVPESVLKKRKRNEEWEKNKxxxxxxxxxxxxxxxxxxxxxxxxYIKEYRDQERDLIRLKRDAKLRGGFYVDPEAKLLFIIRIRGINDMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLQRVEPYVTYGYPNLKSIRELIYKRGYGKVNKQRIPLTDNAVIEQVLGQYGIICIEDLIHEIITVGPNFTKANNFLWPFKLSAPSGGLKKKRNHYIEGGDAGNRELKINELIRRMN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
733		66		33	0.997452
763	75		25		0.996473
764	75	25			0.996473
802			20	80	0.995493
807		20		80	0.995493
855		85		14	0.993533
943	88		11		0.923564
953		11		88	0.923564
1071	20	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain