SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene390

Length: 1333 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene390

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1410	25/25

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein DnaJ with tetratricopeptide repeat [Arabidopsis thaliana] gb\|AED91808.1\| Heat shock protein DnaJ with tetratricopeptide repeat [Arabidopsis thaliana]	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3		IPR015609	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN93

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 113 - 182

Fln protein: MILGVEPSSSAAEIKKSYRKAALKHHPDKAGQFLVRNDAGDNGLLNECEEEVRKDAQKLFQMIGEAYAILSDPGKRLRYDAEEELRKLRISSSSKSETESESSGFLHEKGSRQ

Protein Length: 114

Fln nts: GATTACTCGAGGCATCTAAATGAGTTAGAGACGATAGATTTGAAGTTAACATCTGAAGCTTCAGAAGGAATAATGAAGGCAGAGCAAGTGGATGATAAGATTGATGAAGCAGTAAACCTTCTTAGCGCAAAAAACTCAGGTGGTGTATCACATGCATTGCATCTAGTAAACGACGCTCTTTCAATCTGCCCCCATTCTGAAAAATGGCTTGAATTAAAGGCTCAGGCTTTTTTATCATTGTGTAAGTACGAGGAGGTGATACAAGCTTGTGAAGAAGGCTTGGCTTCTGTAGATCAGAATCATTATTGTGAAAAAAGGGGCAGTGAAAATAAAACGTGTAAGGACGAAGTGTATGGAGGCCATTGCAATTGTCCCATAAAGTTATCGTTCTGGCAAATGAGTGGAAAGGCAAAATTCTATTTGGGTAGACTTGAAGAAGCACTTGGTTCACTCTTAAAGCATGAGGAAGCAATTGCTGCAGTTGTAATGTCTTGCAAAGGGCGAGTAGAATCATTAGCACCATTGATAGCTACCATCCGTAATCTCTTGCACCATAAGGCTGCAGGGAATGAAGCATTCCAAGCAGGTAAATATGCAGCAGCAGAGGAACACTACACTGCTGCATTGGCATGCAATAATGCATCAAGGCCTTTTACTTCCGTGTGCTTTTGCAATCGAGCTGCAGCTTCTCATGCTCAAGGTCACATTGCAGATGCCATTGCAGACTGCAATCGAGCCATGGCCCTTAATCCAGAGTATCCTAAGGCCATTTCTAGGAGAGCCAATTTGCATGAGATCATACGTAACTATGGACAAGCAATTAGTGATATGCAAAGGCTTATAACTCTTCAAGAGAGCCAGCAGCAAAGGGAAAATGTGGAGTGAGAAGGTTGGGGAATTCAGGCAGTATTGCTCAAGATCTCAAAGAAGCCTATGAACGGCTAGCCAAAGCAGAGGAAGATGTGAAAAAAGGGAACCCTTTAGATTATTAC_-_ATGATCTTGGGTGTTGAACCTTCAAGTAGTGCTGCTGAGATCAAGAAGTCGTATCGAAAGGCAGCTCTTAAACATCATCCGGACAAGGCTGGGCAGTTCTTGGTGCGGAATGATGCTGGAGATAATGGACTCTTAAACGAATGCGAGGAGGAGGTCCGCAAGGATGCACAGAAATTGTTTCAAATGATTGGAGAAGCATATGCAATACTTTCAGATCCTGGCAAGCGTCTTCGCTATGATGCTGAAGAGGAGTTACGGAAGTTACGAATATCTAGTTCTTCTAAATCTGAAACTGAGTCAGAGTCCTCTGGTTTCCTGCATGAGAAAGGCAGTAGACAACA

Fln Alignment:

Contig390___LDYYMILGVEPSSSAAEIKKSYRKAALKHHPDKAGQFLVRNDAGDNGLLNECEEEVRKDAQKLFQMIGEAYAILSDPGKRLRYD
B8LN93_______________VDYYIILNVGRRASEDDLKKAYRKLAMKWHPDK-------------------NPNNKKEAEAKFKQISEAYEVLSDPQKRAIYD

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
579	83		16		0.994512
641	75		25		0.996473
643		25	75		0.996473
644		75		25	0.996473
647			25	75	0.996473
1082	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain