SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene184

Length: 1665 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene184

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10145	73/73

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	4.0e-18	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is shorter than subject: 322 - 431

Fln protein: ERMEAAVMSSKGLNEFQAEIGVLTKVRHRHLVALLGYCIEGTERLLVYEYMPQGPLSHHLFDWEKHNLKPMDWTKRLTIALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKCSIETRLAGTFGYLAPEYAVTGRVTTKADVFSYGVILMELITGRRALDETQPEESVHLVTWFRRMHISKETFRNAIDKALEVTDETFKSICTVAELAGHCTAREPYQRPDMGHAVSVLSPLVEQWKPSDPDDEDCYGIDLDMTLPQALKKWQAFEDSNVDESIRSMDNTQSSIPTRPLGFADSFTSADGR*

Protein Length: 323

Fln nts: GAGAGAATGGAGGCAGCGGTTATGAGTAGTAAGGGATTGAATGAATTCCAGGCAGAGATTGGTGTTCTTACAAAGGTTCGTCATAGACACCTTGTTGCATTGCTTGGCTACTGCATTGAGGGAACTGAAAGGCTTTTGGTTTATGAATACATGCCTCAAGGCCCCCTCAGTCACCATTTGTTTGACTGGGAAAAACACAATCTGAAGCCAATGGATTGGACAAAGAGACTCACTATTGCATTGGATGTTGCTAGAGGTGTGGAGTATCTTCACAGTTTGGCTCACCAGAGTTTTATTCATAGAGATCTTAAGCCTTCAAATATACTTCTTGGAGATGATATGCGAGCCAAAGTGTCAGACTTTGGGCTTGTTAGGCTTGCGCCTGAAGGGAAATGCTCCATTGAAACCAGACTGGCGGGCACTTTTGGCTACCTTGCGCCTGAATATGCAGTCACTGGTCGTGTGACAACGAAGGCTGATGTTTTCAGTTATGGAGTGATACTTATGGAGCTCATAACAGGCAGAAGAGCTTTGGATGAAACACAGCCCGAGGAGAGTGTGCATCTGGTAACGTGGTTTAGACGGATGCATATCAGTAAAGAAACCTTTAGGAATGCAATTGACAAGGCTCTGGAAGTCACAGATGAGACATTCAAGAGCATTTGCACTGTTGCAGAACTAGCAGGTCACTGCACTGCACGGGAGCCATACCAGCGACCGGATATGGGTCATGCTGTTAGTGTGCTATCTCCTTTGGTTGAACAATGGAAACCCAGTGATCCAGATGATGAAGATTGTTATGGAATAGATCTGGACATGACTTTACCACAAGCACTGAAAAAATGGCAGGCCTTTGAGGACTCTAATGTAGATGAATCTATAAGAAGCATGGACAATACACAGTCCAGTATCCCCACAAGACCTTTAGGGTTTGCAGATTCCTTCACTTCAGCAGATGGTCGATAA___TCATTTTTTTGAAAATTCAGAGTCCAAATTATAAAAATCGGAGACATGATAGAGAAGCCAGGGGATGCTCTGATAAATTTGGCTATCCAAAAGTATTGGATGGAACAAATTTCAATCCTAGAAAATGTTTGTTTCAAGTTTTTGGTGGTAGGAAGTGGTGTTATTACTGACGAGTTCAATGAGTTCTCCAGATTCAAATAGCTCTTCATAATTTAAAGTGGAACACCGGACATGAGATACTGATTGTTGCTCCAGACACCTTGATGTTTAAAGGAATATCAATGAGTTTTCTCATTTTTAAATGCCTGCACTGCAATATCAATTCCTACGGGGAGCTAGGATTGGCCTAGTGCTTGGGTATTGTTTCAACTTTCAACCTTCTGGGACAGGTTTGAAGCAAGATCTGTATTGCAAGGTCTCTTCTGACCGAGAGTTTGAGCAGCAATATCCAGAAAGCTGCAGTAGGATTTTGTTTTTCATATAATGGCTGTTAGGCAGTGTGAAGCTATATATGAACTCAGAAATGTATAATCTAGGGTACTGTGCATGTACAGATACATTTTCGACATTTTGCATTTTGGAAGGAAACTTCCTTTTTCATCTCTGATTTCCCTGTTTTGACTCTTGAGCACGCGAACTTCAACTCTTAGTGGGAAAACCTCTTCCTTTTTTTTATAATAAAAGTTGCATTGATATTTC

Fln Alignment:

Contig184___KGLNEFQAEIGVLTKVRHRHLVALLGYCIEGTERLLVYEYMPQGPLSHHLFDWEKHNLKPMDWTKRLTIALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEG-KCSIETRLAGTFGYLAPEYAVTGRVTTKADVFSYGVILMELITGRRALDETQPEESVHLVTWFRRMHISKETFRNAIDKALEVTDETFKSICTVAELAGHCTAREPYQRPDMGHAVSVLSPLV
B8LKY1_______________QGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLF---RKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLS-GHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
578		13		86	0.999973
690	85		14		0.999981
823		12		87	0.992554
913		75		25	1.0
971			25	75	0.996473
1106		16		83	0.994512
1115	16		83		0.994512
1143		22		77	0.999999
1203	11		88		0.923564
1335	75		25		1.0
1372	12			87	0.992554
1443		20		80	0.995493
1514	90		10		0.90298
1642		20		60	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain