SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene148

Length: 1160 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene148 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene61492	34/39
SustainPine v2.0	sp_v2.0_unigene77146	4/39
SustainPine v2.0	sp_v2.0_unigene80206	1/39

Source	Descriptions	Term	Type	Identity
AutoFact	DUF868 domain containing protein	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Regulatory protein RecX	IPR003783	-	-
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	-
Sma3	TRASH	IPR011017	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNS3

Fln msg: your sequence is shorter than subject: 213 - 270

Fln protein: KKGSKSFELGTTKVDVFWDLSSARYGSGPEPLEGYFVAVVSDEEVALLLGDMCKEAYKKTHAKPPAETVLISRKEHVFGKNFYSTKAQFCNSGRIHDIVIECQTGGPREPKLCVRIDKELVVQVKHLIWKFRGNQTILVDGLPIEMFWDVHDWLFNPSLGHAVFMFKTCSASVEEEEPWLSKSVSHSFKQELAQSQGHRYGFSLLLYAWKND*

Protein Length: 214

Fln nts: AGAAGAAAGGGTCCAAGAGCTTCGAGCTGGGGACGACCAAAGTGGATGTGTTTTGGGACCTTTCCTCTGCTCGGTATGGATCAGGGCCGGAGCCCTTGGAGGGCTATTTTGTTGCAGTTGTCTCAGATGAGGAGGTTGCCCTTCTGCTTGGGGATATGTGCAAGGAGGCATACAAGAAAACCCATGCCAAGCCTCCTGCTGAAACTGTGCTTATTTCAAGGAAGGAACATGTGTTTGGCAAGAATTTTTACTCCACAAAGGCCCAGTTCTGCAATAGTGGGAGGATCCACGATATTGTAATTGAATGCCAGACTGGAGGGCCTAGGGAGCCCAAATTGTGTGTGAGGATTGATAAAGAGCTTGTTGTGCAGGTGAAGCATCTGATATGGAAATTCAGGGGCAATCAGACCATTTTGGTTGATGGGCTGCCAATTGAGATGTTTTGGGATGTTCATGATTGGCTTTTTAATCCAAGTCTAGGGCATGCAGTATTTATGTTTAAGACCTGTAGTGCATCAGTCGAAGAGGAGGAACCATGGTTGTCCAAGTCAGTTTCCCATAGCTTTAAACAGGAGTTAGCTCAATCCCAAGGGCATAGATATGGATTCTCTTTGCTGCTGTACGCATGGAAGAATGACTAG___GTCTTGTCCTAGTTTTGCGCCGCTGCGGCATTCAAGATCAAGAAAGATCTGGTGTTTTGAAAAATGGGGTCAGAGAATCCAACTGATCTATATTTTGGCACATTTCCACTGTCGCAGATTTGGTTTGCCCTGCAATTGCTGGATGCAAAGATGATGATGATGGGTTCTTATGTACAAGCTCTGGGTATTATCTCTACCTTCTTTATCCTTTCGGCCCCGACTCTAGACTTTTTATATCTCGCGGATAGGAGGTAAGAATTGTAACCAGTTATGTTTGATCCCATCATTGATTGGGAAAACTCTGTTTTATCATTAGAGATGCTCTGGTTTTAGAGCTTTGGATCGATCTACAATTTTCTGTAATATTGGTTGTTAATGGCATCTTTCAAAAGATCATCAATGTACTTTGAGGTGGCCTTAGAATTCATGTCCCATTGAGTTGAGGCATCTTATGTAGCAACATCGAAAGCCATAACACTGCCAATAATATCTTAATATGATTACTGGATGAGAGCTGGA

Fln Alignment:

Contig148___KKGSKSFELGTTKVDVFWDLSSARYGSGPEPLEGYFVAVVSDEEVALLLGDMCKEAYKKTHAKPPAETVLISRKEHVFGKNFYSTKAQFCNSGRIHDIVIECQTGGPREPKLCVRIDKELVVQVKHLIWKFRGNQTILVDGLPIEMFWDVHDWLFNPSLGHAVFMFKTCSASVEEEEPWLSKSVSHSFK-QELAQSQGHRYGFSLLLYAWKND
B8LNS3_______________KKGSKRFELGTTKVDVFWDLSSARYGSAPEPLEGYFVAVVSNEEVALLLGDMCKEAFKKTHAKPPAETVLISRKEHVFGKNCYTTKAQFCNSGRIHDIVIECQTGGPREPKLCVRIDKQLVVQVKHLIWKFRGNQTISVDGLPIEMFWDVHDWLFNPSLGHAVFMFKTIT-SGEVQEPSLSKPVSHSFKHKELAQSQGNGYGFSLLMYAWKND

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
124		20		80	0.995493
477		10		90	0.90298
1008		80		20	0.995493
1015		80		20	0.995493
1016	80	20			0.995493
1017			80	20	0.995493
1019	80	20			0.995493
1021		20	80		0.995493
1090	75		25		0.996473
1092		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
358	370	CAT CAT CAT CAT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain