SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene115

Length: 1672 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene115 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7321	63/63

Source	Descriptions	Term	Type	Identity
AutoFact	La protein 1 [Arabidopsis thaliana] gb\|AAL07086.1\| unknown protein [Arabidopsis thaliana] gb\|AEE86109.1\| La protein 1 [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	50%
Blast2go	la protein 1	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	64%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	64%
Blast2go	cell wall	GO:0005618	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Lupus La protein	IPR002344	-	-
Sma3	RNA-binding protein Lupus La	IPR006630	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	RNA-binding motif	IPR014886	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H2Y4

Fln msg:

Fln protein: MAAVVLDQDTKSKVLRQVEFYFSDSNLPRDKFLKKTIQESDDELVSLALICSFQRMRNHLGLKEAGPENVPEETAAAVGEVIRNSSSTLRVSDDGKRVGRVSKLPEEVLEQVDSRTIAAAPLSYDVKLEDVERFFNQHGKVNSVRLPRHVAGNKALCGSALIEFSSEEEANAVSKLNLVYDGADLEMKPKKDFDAERRTLLEEKHDKNASTGDQWQNDSWGDLVLEDNSYPKGLIIAFTLKKSSEEASGEGNVSKESAEANSGDALDEHKSEEATNTESSCEVANESKSGEAQKEEIKITREDIKLVFQKYGIVKYVDYQMGVESGYIRFEQPEVVQKARAAAVLAEEGGLIVKNYIAVLEAVEGEAEKEYWAKLREGQDRRRQSAGGSRGRGGRGRGGRHSSNSRKPFTKGNGTSIEKKHRRFEEDDGSAKDERSEKVQKLENDGELQASETSKAAEDN*

Protein Length: 462

Fln nts: GAAGAACCCTAAGGAAATTACAAGGGGAGAGGAAGGTTTCTCCACAAAAAAGGTCCTAAACCTAAAACCCTATATGCTCTCCTTAAATACTGCATATCCATTGCTGTTGGCATCTCACTTAAGGGAGGAGTGAGGCCGTTTTGGATTCGTTTTCTCTGAGAAGGTTTTTTTGGCTCAACAAGGAAATAAACTTCCAAGTCAAGGCAGGGAGCAGAGAACAGCAGGAGCC_-_ATGGCAGCAGTTGTTTTAGACCAGGATACCAAAAGCAAAGTCCTCCGCCAGGTTGAATTTTATTTCAGCGACAGCAATCTTCCACGGGATAAGTTTCTCAAGAAAACCATTCAGGAAAGCGACGACGAGTTGGTGAGCTTGGCTCTAATATGCTCCTTTCAACGAATGAGAAACCATCTTGGGCTGAAGGAAGCAGGGCCCGAGAATGTACCAGAAGAAACTGCTGCTGCTGTTGGCGAAGTCATTCGAAATTCGTCTTCTACCCTCCGGGTCTCCGATGATGGGAAGAGGGTTGGGCGTGTTAGCAAATTGCCCGAGGAAGTTCTAGAACAAGTAGATTCGAGGACCATTGCTGCAGCTCCTTTATCCTATGACGTGAAACTTGAAGATGTTGAACGTTTTTTCAACCAACATGGAAAGGTTAATAGTGTGCGCCTGCCGCGCCATGTTGCAGGAAACAAGGCCCTCTGTGGTTCTGCTCTTATTGAGTTCTCGTCAGAGGAAGAGGCCAATGCTGTTTCTAAATTGAATTTGGTCTATGATGGCGCAGATTTGGAGATGAAGCCAAAGAAGGATTTTGATGCTGAAAGGAGAACTTTGCTAGAAGAAAAACATGACAAAAATGCTTCCACAGGAGACCAATGGCAGAATGATAGCTGGGGAGATTTAGTTTTGGAGGATAACAGCTATCCAAAAGGTTTAATTATTGCTTTCACTTTAAAGAAATCATCTGAAGAAGCATCTGGTGAGGGAAATGTCTCAAAAGAGTCTGCTGAGGCAAATTCAGGAGATGCATTGGATGAGCATAAATCTGAGGAGGCAACAAACACTGAGAGTTCCTGTGAAGTAGCAAATGAAAGCAAGTCTGGAGAGGCACAAAAAGAGGAGATCAAAATAACTCGTGAGGACATCAAACTTGTATTTCAGAAGTATGGTATAGTGAAGTATGTTGACTATCAAATGGGAGTGGAGTCAGGATATATTCGTTTTGAGCAACCTGAAGTGGTTCAGAAAGCACGTGCAGCAGCTGTACTTGCTGAGGAAGGGGGCTTAATTGTGAAGAACTATATTGCTGTATTAGAAGCAGTTGAGGGTGAAGCTGAGAAGGAGTACTGGGCTAAGCTCCGTGAAGGTCAAGATAGGCGTAGACAATCTGCTGGCGGCAGTAGGGGAAGAGGTGGCCGTGGCAGAGGAGGCAGGCACTCATCTAACAGTCGAAAGCCCTTTACAAAGGGGAATGGTACCAGCATAGAGAAGAAACACAGACGGTTTGAAGAGGATGATGGATCTGCCAAAGATGAACGATCAGAAAAGGTCCAAAAGCTGGAAAATGATGGTGAATTACAGGCATCTGAGACTTCCAAAGCTGCTGAGGATAATTGA___GCACCTCAGATAATTCAGCAGACCATGCCATATGCTTTATTTGTTTATTGATTATAATTT

Fln Alignment:

Contig115___MAAVVLDQDTKSKVLRQVEFYFSDSNLPRDKFLKKTIQESDDELVSLALICSFQRMRNHLGLKEAGPENVPEETAAAVGEVIRNSSSTLRVSDDGKRVGRVSKL--PEEVLEQVDSRTIAAAPLSYDVKLEDVERFFNQHGKVNSVRLPRHVAGNKALCGSALIEFSSEEEANAVSKLNLVYDGADLEMKPKKDFDAERRTLLEEKHDKNASTGDQWQNDSWGDLVLEDNSYPKGLIIAFTLK----------------------KSSEEASGEGNVSKESA----------EANSGDALD---EHKSEEATNTES-------------SCEVANESKSGEAQKEEIK--------ITREDIKLVFQKYGIVKYVDYQMGVESGYIRFEQPEVVQKARAAAVLAEEGGLIVKNYIAVLEAVEGEAEKEYWAKLR
F6H2Y4_______________MGTASFDEETVKKVIRQVEFYFSDSNLPRDNFLKKTISESEDGLVSLALICSFSRMRSHLNLGDVKPEDVSEDTLKAVAEILRNST-TLKVSEDGKKIGRATELLKPEEVVEQVDIRTIAASPLEYDAKLEDVEAYFGQFAKVNSVRLPRHVAEKRVFCGTALIEYSTEEDAAKVLQQSLVYAGVELELKPKKDFDAERAQQTEEFENSRALLGSNRKNNS-----NAESTYPKGLIVSFTLKRAGGSTEHNGTHEPVNDNADVGKTNTDIDSKENVTGETEDKASENINNDEENSGEDIEKESEEKVEEKTSLESEGKETEDGQKSSEGCDLKGEEKATGEQKPTAATYKDNMDVVMREDLKSVFQKFGTVKFVDFKIGEESGYIRYDEPEAAQKVRAAAVLSEEGGLTVKNYIANLEPVTGEAEREYWSLLR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
694		87	12		0.992554
696		87	12		0.992554
698	12	87			0.992554
699	87		12		0.992554
700	12	87			0.992554
702	85			14	0.993533
879		20		80	0.995493
893	80		20		0.995493
1142		16		83	0.994512
1155		80		20	0.995493
1212	83		16		0.994512
1432	80	20			0.995493
1434	80	20			0.995493
1502		75		25	0.996473
1600	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1212	1223	CAG CAG CAG CAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain