SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene91

Length: 1766 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene91

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2760	91/132
SustainPine v2.0	sp_v2.0_unigene17661	41/132

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	unknown [Picea sitchensis]	-	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSS4

Fln msg:

Fln protein: MRIFNWVHRKFRQNPRDYTAKDSFNGHWSGILQDSPLSSKNSLDERATRVRIPHEDKVTDCIQIDPDCSLNNSHDNIDAKNEDTEALLGSRDSKVAMLLRNWENGLLTIGTFGIDQGNCYGSLDGENFGISETDNEEELIDPIEMEVLEEKLEEVFGSAGNSKISDDYHMKAVKAQQWENKGYTITDCNKEYSIKDLLNSGHGNNNDDYNNNNGNKIYPLQEYFEVPLLAETVRKKEHRTTLADLFSRSKNQASSTHYILDDRAKIEYEHYYEQNKIKQDEKHMPKSGRSFVKKVLKWKGGGGGEYRPKKWVMKMLRKKIYPETIDDLHARELMDGHLDISKTFVNASKLKELQDSDKNSVMRSTDPKSISANPDYELVSLLRDSSKGSQECWIKTDSEYVVLEL*

Protein Length: 407

Fln nts: GGATCAGTTCTGATTACAGAATTGCAGAGAGCTCAAGGAGGTTCTGCGTTGTAAGTCCTGAGTTTGGGAAAGAGGAGCAAAA_-_ATGAGAATCTTCAATTGGGTTCACAGAAAGTTTCGTCAAAATCCTCGTGATTATACTGCCAAGGATTCTTTTAATGGACACTGGTCGGGTATTCTTCAGGACAGTCCACTGTCTTCAAAAAACTCTCTTGATGAAAGAGCCACAAGGGTCAGAATCCCACACGAAGATAAAGTTACTGACTGCATTCAAATCGACCCCGACTGCTCTCTGAATAACAGTCATGATAATATCGATGCAAAGAACGAAGATACCGAGGCCTTGTTGGGTTCAAGGGACAGTAAAGTAGCAATGCTGTTGAGAAACTGGGAGAATGGCTTGCTTACCATTGGAACATTTGGGATTGACCAAGGAAACTGTTATGGGTCTCTGGATGGTGAGAATTTCGGAATCAGTGAAACAGATAACGAAGAAGAGCTTATCGATCCGATTGAAATGGAGGTTCTGGAAGAAAAGCTGGAGGAGGTGTTTGGGTCAGCTGGGAACAGTAAGATTAGTGACGATTACCATATGAAAGCTGTGAAGGCCCAGCAATGGGAGAACAAAGGATATACTATCACAGACTGCAACAAAGAATATTCCATCAAAGATTTACTAAACTCTGGCCATGGCAATAACAATGACGATTATAATAACAACAATGGGAACAAGATTTATCCTTTGCAGGAATACTTTGAGGTTCCACTGTTAGCTGAAACGGTCAGAAAGAAAGAGCATAGAACCACCTTGGCAGATCTCTTTTCTCGAAGCAAAAATCAAGCGAGTTCTACTCATTATATATTGGACGATAGAGCCAAAATAGAATATGAGCATTATTATGAGCAAAATAAAATCAAACAAGATGAAAAACATATGCCAAAGTCTGGTCGTTCGTTTGTGAAGAAGGTTCTTAAATGGAAAGGAGGAGGAGGAGGAGAATATCGTCCCAAAAAGTGGGTTATGAAAATGTTGAGGAAAAAGATCTACCCAGAAACCATAGATGATTTGCATGCCCGTGAGCTTATGGATGGACATCTTGATATATCAAAAACCTTTGTAAATGCATCAAAGCTAAAGGAATTGCAAGACTCCGACAAGAACTCTGTCATGAGAAGCACAGATCCTAAAAGCATTTCGGCAAACCCAGATTATGAACTGGTTTCTTTACTTCGTGACAGTTCTAAGGGAAGTCAGGAATGCTGGATCAAAACAGACTCTGAATATGTTGTGCTGGAGCTGTAA___ACTTTGGAGTTTAACAGTGAGCTCTAGTTTACAAAACTGTTAAGCAAGCATTCTATCACGAGCCAATCAGCCTTGGAGGATGTTGTGGCTTTTACCTGCAAGTATTTCTATTACATTTCAGATTGGCTCATAATAAGGTTTATCTGCTTCAAGGCTTGAATAGTTCTGATATTCTTCCTTGAGTTGCAGAGGCTGTTGATGTAGTATTGCTATCATGTTTGTTATTGGAGTGTCCTCTCATCTCGTATTCAGACGGAAATTATCTAGTAAATTAGGCAAAGACCTAATCTGCTTTCTAATTTCAATAGCTATAGGCTTATAGACTTCTTTCAGGACATTGTTGTAAAATTATTAGCTAAACCCTAAACCTATTTGAGTCTTTTAAATGTATTAGACACTTAATTATTATGTCCCTGGTTAAATTCCATCCTACAATTTTAAAAAAATATATATATATAGCTTTCCT

Fln Alignment:

Contig91___MRIFNWVHRKFRQNPRDYTAKDSFNGHWSGILQDSPLSSKNSLDERATRVRIPHEDKVTDCIQIDPDCSLNNSHDNIDAKNEDTEALLGSRDSKVAMLLRNWENGLLTIGTFGIDQGNCYGSLDGENFGISETDNEEELIDPIXXXXXXXXXXXXFGSAGNSKISDDYHMKAVKAQQWENKGYTITDCNKEYSIKDLLNSGHXXXXXXXXXXXXXKIYPLQEYFEVPLLAETVRKKEHRTTLADLFSRSKNQASSTHYILDDRAKIEYEHYYEQNKIKQDEKHMPKSGRSFVXXXXXXXXXXXXXXXXXXWVMKMLRKKIYPETIDDLHARELMDGHLDISKTFVNASKLKELQDSDKNSVMRSTDPKSISANPDYELVSLLRDSSKGSQECWIKTDSEYVVLEL
C0PSS4______________MRIFNWVHRKFRQNPHDYTAKDSFNGHWSGILQDSPPSSKNSLDERAPRVRIPREDKVTDCIQTDTDCSLNNNNDNIDAKNEDTEALLGSRDSKVAMLLRNWENGLLTIGTFGLDQGNSYGSLDVENFGISETDNEEELIDPIEMEVLEERLEEAFGSAGNSKISEDYHMKAVKAQQWESKGYTITDCSKENSMKDLLNSGHGNNNDNYNNNHANKIYPLQEFFEVPLLAETVRKKEHRTTLADLFSRSKNQASSTHYMLDDGAKTEYERYYEQNKIKQGEKHPPKSGRSFV---KKVLKWKGGEYRPQKWVMKMLRKKIYPETLADLHTRELMDGHLDISKTFVNASKLKELQDSDDNSVMRCTDPKNISANRDYELVSLLRDSSKGSQECWIKTDSEYVVLEL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1298		10		90	0.999898
1745	75			25	0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
979	995	AGG AGG AGG AGG AGG AG	17
1746	1758	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain