SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene13

Length: 1480 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene inia_v1.0_unigene13 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2891	64/64

Source	Descriptions	Term	Type	Identity
AutoFact	Putative MYB transcription factor n=1 Tax=Rosa rugosa RepID=F2QKV9_ROSRU	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	72%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	72%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ14

Fln msg: your sequence is longer than subject: 404 - 139

Fln protein: MYQMEYPSNPGIVLNHGRAPSQPERQHQQPVLTGSSHYPCDPSVVVSADPKPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSHLQKYRLGKQPHREVSVDRSNDGGSSDGGHCLSRMARDSSIAPNHEAMQIADALRAQIEVQRRLHDQLEVQRRLQLRIEAQGKYLQTILEKAQQTLASEASTSAGLEATRAKLADLASKLPTNSMKPNYSAVKVAPLMDIHRQDHGDLEAKPHLRDRCSQNQFAGHTMEQSLNESESPIEKKRCRKLFHESNGGNSPTKLRELGLNASACKTEKEQEEEEEFIKPTTVERPAASRALVDERMAMLVQSNGLSLIQADHEPGLYHPHSMLGNCRKVAEGLDLNRKGEGSVPQQGRELDLNAYGWGR*

Protein Length: 405

Fln nts: TCTCACGCAGAAATACATCAGGTGTTGGGTTGCTGATCAATATAGAAGCATC_-_ATGTACCAGATGGAGTACCCCAGCAATCCAGGGATAGTACTGAATCATGGGAGAGCGCCATCTCAGCCTGAAAGGCAGCACCAGCAGCCTGTATTGACAGGTTCTTCCCATTATCCATGTGACCCCAGTGTTGTTGTTTCTGCAGACCCCAAGCCTCGCCTCAGATGGACTCCAGAGCTCCATGAACGATTTGTAGATGCTGTTAGTCAACTGGGTGGCCCTGATAAAGCCACGCCGAAGTCTGTTCTGAGAGAGATGGGTGTGAAGGGCCTTACTCTGTACCACTTGAAAAGCCATCTTCAGAAATACAGGCTTGGGAAGCAGCCCCACAGAGAAGTCAGCGTCGACAGAAGCAATGATGGAGGAAGTTCTGATGGTGGACACTGCCTAAGCAGGATGGCCCGGGATAGCAGCATCGCACCAAATCATGAAGCAATGCAGATTGCTGATGCTCTGAGAGCTCAGATAGAAGTTCAGAGAAGACTCCATGACCAGCTAGAGGTTCAAAGGCGCTTGCAGTTGAGAATAGAGGCCCAGGGTAAATATTTGCAGACCATATTAGAGAAAGCACAGCAAACATTGGCATCAGAAGCATCGACATCAGCAGGCCTTGAAGCCACAAGAGCCAAGCTTGCAGATTTGGCCTCCAAGCTTCCTACAAACAGCATGAAGCCAAATTACTCTGCAGTGAAAGTCGCTCCATTGATGGACATTCATAGACAAGATCATGGGGATCTAGAGGCCAAGCCCCACCTTAGAGATCGTTGCTCTCAAAATCAGTTTGCAGGCCATACAATGGAGCAGAGTTTGAATGAATCCGAGAGTCCAATTGAGAAGAAAAGGTGCAGAAAACTTTTCCATGAGAGCAATGGAGGGAATTCCCCTACCAAGCTGCGAGAATTGGGCCTTAATGCCTCTGCCTGTAAAACAGAAAAAGAACAAGAAGAAGAGGAAGAGTTCATAAAGCCCACTACTGTTGAAAGGCCTGCTGCAAGTAGAGCATTAGTGGATGAGAGAATGGCCATGCTTGTACAGTCTAATGGCCTCTCTTTAATCCAGGCTGATCATGAACCAGGACTGTACCATCCACATTCCATGTTGGGCAATTGTCGGAAGGTGGCAGAAGGATTGGATTTGAACAGGAAAGGGGAGGGATCAGTTCCCCAGCAGGGAAGAGAGCTGGATCTCAATGCATATGGATGGGGCAGATGA___AGCATCTCAATCTCAAAGCAGTTGTTTGTCATGCTATTTTTGTAGATTTTGGTCTTATCCCACAACTAATCTATCTATATATTAACCTCTTGTATGGTATGGGATATCTAGGTTTGGTATCAAGCACACTCATTTATTTGAGATATGTGATCAGATAATGTTTTGGAAGCTACTCAGCTACCTGTATATTTTAATACGTCCTGTACTTTCACCATT

Fln Alignment:

Contig13___MEQSLNESESPIEKKRCRKLFHESNGGNSPTKLRELGLNASACXXXXXXXXXXXXXXXXXXE-RPAASRALVDERMAMLVQSNGLSLIQADHEPGLYHPHSMLGNCRKVAEGLDLNRKGEGSVPQQGRELDLNAYGWGR
A9NQ14______________MEQSLNESESPIEKKRCRKLFHESNGGNSPTKLRELGLNASACKTEEEEDEEEEQLIKPTTVERPAATRALVDERMAMLVQSNGLSLIQANHEPGLYHPPSMLGNCRKVAEGLDLNRKGEGSVPQQGRELDLNAYGWGR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1033	10	90			0.90298
1267	12		87		0.992554
1364			14	85	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain