SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene12

Length: 1230 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene12

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15688	359/370
SustainPine v2.0	sp_v2.0_unigene15960	9/370
SustainPine v2.0	sp_v2.0_unigene20580	1/370

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI	-	-	74%
FL-Next	sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	40s ribosomal protein s8	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	0.0	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMS2

Fln msg:

Fln protein: MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYELHYGQDIGRKKKAAAAAAKKDTTEEGEATAEEEKKKSKHLLRKIEKRQEGHKLDTHLEEQFASGRLLAAISSRPGQCGRADGYILEGRELEFYMKKIQRKKGKGAGAA*

Protein Length: 225

Fln nts: GACGCAAACCCTAGTCTTGGTATACTGGGTTTATGTTCTTTCGTTCCTCCTCTTCCCTCTCGGTTTTAGGTATAGGGTTGCGGCGGTGCGGTCCGATCTGCAGGGTTTCTGGTCGATTCTGAAACA_-_ATGGGTATCTCACGGGATTCACTTCACAAGAAACGTGCGACTGGAGGGAAGAAGAAGGTGTGGAGGAAGAAGCGAAAGTATGAGTTGGGCAGACAGCCTTCAATGACGAAACTGTCGAGTAACAAGACCGTGAGAAGGGTGCGTGTGAGAGGAGGTAATGTAAAGTGGAGGGCTTTGAGACTCGATACTGGTAACTTTTCTTGGGGTTCTGAGGCTGTGACTCGGAAGACTCGTATATTAGATGTGGTTTACAATGCATCTAATAACGAGCTTGTCAGGACCCAGACTTTGGTAAAGAGTGCCATCATTCAGGTTGATGCTGCTCCTTTCCGTCAGTGGTATGAGCTGCACTACGGTCAGGATATTGGCAGGAAGAAGAAGGCTGCTGCTGCTGCGGCCAAGAAAGATACTACCGAGGAGGGAGAAGCTACAGCCGAGGAGGAGAAGAAAAAAAGCAAACATCTTTTGAGGAAGATCGAGAAGCGACAAGAAGGTCACAAACTTGACACACATCTGGAAGAGCAATTTGCTAGTGGTCGGCTTTTGGCTGCAATTTCTTCACGTCCAGGCCAGTGTGGACGTGCTGATGGGTATATTCTTGAGGGTCGTGAGCTTGAGTTTTACATGAAAAAGATTCAGAGAAAGAAGGGAAAGGGAGCTGGTGCTGCTTAA___AAGCAAGCAAATTTTGGTTCTTGAGACACTTAGCAAGATTAATGAATAATCTTGCTATGTTCACAATGTTCAGTGTTGCCCCCAAGTAACATCAAAAGAGCTTTATAGTTAGGATTGAGGATAATTTTTGTGGTCATGGGTCATGGTTCTATTTTCAACTGAGCAGAGTATAGTAATTACAAATTTGTTAGATAGCTGGATTTTTAATTTATTTTCTAATGGAATGTCAGACTGAAGAACAATTTGAAGCGTCACGTAAGATTGCTAATCTGCTGAACAGCACTTTAGTTTTTACTGTCAGATTTGATGGTTTGAAGTGTCATGCAAGATTGCTAATCTGCTGAATGGTCCTTTAGTTTTTATTTCCATATCTTCTGCCTGCCATTGCTAATTTTCATTTTTGACTAATACATTCAGTGCTTTCTTATTGTT

Fln Alignment:

Contig12___MGISRDSLHKKRATGGXXXXXXXXXXYELGRQPSMTKLSSNKTXXXXXXXXXXXKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYELHYGQDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSKHLLRKIEKRQEGHKLDTHLEEQFASGRLLAAISSRPGQCGRADGYILEGRELEFYMKKIQR
A9NMS2______________MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYGLDIGR--KKKAAAAKKETTEEGEATAEEEKKKSKHLLKKIEKRQEGHKLDSHLEEQFASGRLLAAIASRPGQCGRADGYILEGRELEFYLKKIQR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
714		10		90	0.999898
876	2		97		0.946738
1095	5		94		0.998894
1178		5		94	0.9982

SSRs (tot: 1)

Start position	End position	Sequence	Length
508	521	GCT GCT GCT GCT GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain