SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene7

Length: 1890 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene7

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11695	93/93

Source	Descriptions	Term	Type	Identity
AutoFact	U-box domain-containing protein 25 [Arabidopsis thaliana] sp\|Q9LT79.1\|PUB25_ARATH RecName: Full=U-box domain-containing protein 25; AltName: Full=Plant U-box protein 25 dbj\|BAB02462.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM63504.1\| unknown	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	u-box domain-containing protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	0.0	64%
Blast2go	ligase activity	GO:0016874	Molecular Function	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXN2

Fln msg:

Fln protein: MVKHKPNMMPVVSPLDLTVQIPYHFRCPISLDLMRDPVILCTGQTYDRSSIEKWVASGNSTCPVTMQSLEDFTLIPNHTLRRLIQEWCVANSSKGIERIPTPKQPADPQRVRSAIMEASSSQSTASIRTSALRTLKNLGKERDQNKTILAQEGIVPVLISILTAEEEKQEEAKGNPEGLQSQSDDELYEEALGVLAFFPLTDAERVRLAQPRVLAHIASLLLWGSMEARVNAAHLVESLTSSDELHELRSTVGNTEGIVQGLVKILRELLYPRALKVGIKSLLSLCFIKANREKAVAAGAVSALIEGLVDFEKCDAERALATIELLCRTESGCKDLCDHALAVPVLVKTILKVSGRATEYAAGALLVTCSASEALQKEAIQAGILTQLLLLVQSDCTERAKRKAQMLLKLLRNAWSDESSSPVFCRTDVVPF*

Protein Length: 434

Fln nts: GCTTAAATGGTTTTCGATGTATTTTCGGGTGAGTATTGATTTCTGATCAGG_-_ATGGTGAAGCACAAGCCTAACATGATGCCTGTGGTGTCTCCACTGGACCTCACAGTGCAGATCCCCTACCATTTCCGGTGCCCCATATCCCTGGACCTGATGAGGGATCCAGTCATCCTTTGCACAGGCCAGACCTATGACAGATCTAGCATTGAGAAATGGGTGGCCAGTGGCAACAGCACTTGCCCTGTTACAATGCAGAGTCTTGAGGATTTCACACTCATACCCAACCACACTCTCAGGAGGCTTATCCAGGAATGGTGTGTAGCCAATAGCTCAAAGGGCATTGAAAGGATTCCTACCCCAAAGCAGCCAGCGGATCCCCAGAGGGTCAGATCAGCTATCATGGAAGCATCTTCATCTCAATCCACAGCTTCCATCAGAACCAGTGCACTTCGGACGTTGAAGAATTTGGGCAAGGAGCGTGATCAGAACAAGACCATCCTGGCTCAGGAAGGGATTGTTCCAGTATTGATATCAATCCTCACAGCCGAAGAAGAAAAACAAGAAGAAGCTAAAGGGAATCCAGAGGGGCTGCAATCACAATCTGATGATGAATTGTATGAAGAGGCATTAGGGGTTCTTGCGTTCTTCCCTTTGACCGATGCGGAGAGGGTGAGATTAGCCCAGCCACGGGTTTTAGCCCATATTGCATCCTTGCTTCTCTGGGGATCCATGGAGGCCAGAGTGAATGCTGCACATTTGGTTGAGTCCCTCACTTCATCTGATGAACTCCATGAACTTAGGTCTACGGTCGGTAATACGGAGGGCATAGTGCAAGGACTGGTGAAGATCCTGAGAGAGCTCCTCTACCCCCGGGCATTGAAGGTCGGCATCAAATCGCTCCTATCACTCTGTTTCATCAAGGCCAACAGGGAGAAGGCAGTTGCAGCAGGGGCAGTGAGTGCACTGATTGAAGGCCTGGTGGATTTCGAGAAGTGTGACGCAGAGAGGGCCCTTGCCACCATTGAATTGCTGTGCAGGACCGAATCAGGCTGCAAGGATCTCTGTGACCATGCTCTAGCTGTCCCTGTTTTGGTGAAAACCATTCTCAAGGTTTCTGGCAGAGCCACAGAGTATGCTGCGGGTGCACTTCTTGTCACCTGCAGTGCTTCAGAGGCATTACAGAAGGAGGCCATTCAGGCCGGTATTCTAACACAGCTCTTGCTTCTTGTCCAGAGTGATTGCACTGAAAGAGCCAAGAGAAAAGCTCAGATGCTGCTGAAGCTCCTCAGGAATGCCTGGTCAGATGAATCGTCGTCACCTGTCTTCTGTCGGACCGATGTGGTGCCCTTCTAG___GTCTCCACCAAACAAATTAGACCACCACTCTTGTAATGGTCTTGGATCCATTGCTACAACATCCTGAATGTTGGGTGCTATTTCTTGTTGGCAGTATAGTCAAGTTCACTTCTCCTCTGCAATCCAGAGTTGAAAAAAACAGATCTACAAGCTAATCATATCAGAGATCATTCATGTTCTATGCATAGCTTAGCATTGTTCTGCTGGTCTCCTCAATATGCTACTGTGGATTTCACAATTCATATATAGTCTTGATTACTGTGATATATATAGCCCAAGCCAAAGCCTATAAAATGTGTTTTATGGGTCTTTTTGATTTTGAAAGGCTTTTTCTATGGCTGTACTCATCTCTGTTTCACAGCTCTCAGATCAAGAGCCCATAGGATAGACAAGGAAGAGCTAATAGTCTTCTTTATGCTGATTATGTATTGTATTGAACAAAAGCTTCAATTTCTAAGCATTATGTGCAAATTATTTGGGGCCAGATTTGATGAATCTGTCCCCCTTACTGCTCAAATAAAACATCAGATCCATTTCATT

Fln Alignment:

Contig7___QIPYHFRCPISLDLMRDPVILCTGQTYDRSSIEKWVAS-GNSTCPVTMQSLEDFTLIPNHTLRRLIQEWCVANSSKGIERIPTPKQPADPQRVRSAIMEXXXXXXXXXXXXXXLRTLKNLGKERDQNKTILAQEGIVPVLISILTAEEEKQEEAKGNPEGLQSQSDDELYEEALGVLAFFPLTDAERVRLAQPRVLAHIASLLLWGSMEARVNAAHLVESLTSSDELHELRSTVGNTEGIVQGLVKILRELLYPRALKVGIKSLLSLCF-IKANREKAVAAGAVSALIEGLVDFEKCDAERALATIELLCRTESGCKDLCDHALAVPVLVKTILKVSGRATEYAAGALLVTC--SASEALQKEAIQAGILTQLLLLVQSDCTERAKRKAQMLLKLLRNAWSDESSSPVF
A9NXN2_____________EIPSYFICPISMQIMRDPITVCTSITYDRESMEKWIYSCGKNTCPATMQVMPNYNMTPNYTLRRLIQGWCLANSSKGVQPIPTPKPPIDSNQVNKLLQD--FESCSPFQLINGLKKLRSLADESEANRRCIAVCGGDSALISVIEMNTVEMESG--------CYQCPMACDEALGILYKLPMADETAETLSRSKTLKPISWILKKGSCNGRFYSAMLLKTVSSSGQKILQQLVVNADDDLIEGLLQLLTEEVCLQATTSSLEILMAICSPSRKNRIKAIEAGAIYILIELLPESQRMNCEKMLCLLDILCECAEGRATTIDHAMGIASISKKIFRVSQVATEKAIRILWSLCKFSPTPRLLNEMVQIGAVYKLCVLLQLECTSKTKQKAREMLRAHGKYWTISPCVPSY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1028		16		83	0.994512
1487	83		16		0.994512
1623	12		87		0.992554
1645		14		85	0.993533
1739	11		88		0.923564
1842	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain