SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene706

Length: 1571 nt

UniGene Fasta

Ace file of the UniGene inia_v1.0_unigene706

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15656	404/470
SustainPine v2.0	sp_v2.0_unigene15689	25/470
SustainPine v2.0	sp_v2.0_unigene16235	32/470
SustainPine v2.0	sp_v2.0_unigene33485	8/470

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caffeoyl-CoA O-methyltransferase (Fragment) n=1 Tax=Plantago major RepID=Q2YHM9_PLAMJ	-	-	2.8026e-45	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	caffeoyl 3-o-methyltransferase	-	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	O-methyltransferase, family 3	IPR002935	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT68

Fln msg:

Fln protein: MGSHAENGNGVEVVDPTDLTDIENGKPGYDKRTLPADWKFGVKLQNVMEESIYKYMLETFTRHREDEASKELWERTWNLTQRGEMMTLPDQVQFLRLMVKMSGAKKALEIGVFTGYSLLNIALALPSDGKVVAVDPGDDPKFGWPCFVKAGVADKVEIKKTTGLDYLDSLIQKGEKDCFDFAFVDADKVNYVNYHPRLMKLVRVGGVIIYDDTLWFGLVGGKDPHNLLKNDYMRTSLEGIKAINSMVANDPNLEVATVFMGYGVTVCYRTA*

Protein Length: 273

Fln nts: AAAAACCTAGCATGTCACAATGCTGATTAATTTAAACCTACAGGTGAAGTAAAAACAAAACTCATAATAAAATGCAACAGATCCCAGGCTCTTAGAGTGGATAAAAGCTCATAATATATTTTAACAGCTCCCCTGCCCTAAGAGTGGGTATTTTGGTCTCGTGCGCCGACCAAACAACGCAGGTTGGGTGTTCAGCTAATTAAGCAATCCCTTTGTCTTGAAGTATTCCACAGCGTCATCATAGATTTCATCCATGCCAAACTTGAAGGAGAAACCGCTTTCCACCAGTTTCTTCGAAGAAATGTTCACTTTGGGGGTTTCTGGCACATCCTCAAACTTGGTTGGGACATTGTACTGGGGATATCGTTTAGACAAATATTGTGCGAGCTGTGCAACGGAGGTGTTGATAGGGGAGCAGATGTAACGACCCTGTGCAGCGGTGTTCTCCATCAAGAAAATCTGGGCACTGCAGACGTCGTCCACGTGTACCAAGGATATGGAGCCTGATATTAACTGCATCCCTATCAGACCCGGCAACATGTGTGGATTCCCCGTGAGGAGGCAGCCCTGGTGAACGATACG_-_ATGGGCTCGCACGCTGAGAATGGCAACGGGGTGGAGGTTGTTGATCCAACGGACTTAACTGACATCGAGAATGGGAAACCAGGTTATGACAAGCGTACGCTGCCTGCGGACTGGAAGTTTGGAGTGAAGCTTCAAAACGTTATGGAAGAATCCATTTACAAGTACATGCTGGAAACATTCACCCGCCATCGGGAGGACGAGGCGTCCAAGGAGCTCTGGGAACGGACATGGAACCTGACACAGAGAGGGGAGATGATGACATTGCCAGATCAGGTGCAGTTCCTGCGCTTGATGGTAAAGATGTCAGGTGCTAAAAAGGCATTGGAGATCGGAGTTTTCACTGGCTATTCATTGCTCAATATCGCTCTCGCTCTTCCTTCTGATGGCAAGGTGGTAGCTGTTGATCCAGGAGATGACCCCAAATTTGGCTGGCCCTGCTTCGTTAAGGCTGGAGTTGCAGACAAGGTGGAGATCAAGAAAACCACAGGGTTGGACTATTTGGATTCCCTTATTCAAAAGGGGGAGAAGGATTGCTTCGACTTTGCATTCGTGGACGCCGACAAAGTGAACTACGTGAACTATCATCCACGGCTGATGAAGTTAGTGCGCGTGGGGGGTGTCATAATTTACGACGACACCCTCTGGTTTGGTCTGGTGGGAGGAAAGGATCCCCACAACCTGCTGAAGAATGATTACATGAGGACTTCTCTAGAGGGTATCAAGGCCATCAACTCCATGGTAGCCAACGACCCCAACTTGGAGGTGGCCACAGTCTTTATGGGATATGGTGTCACTGTTTGTTACCGCACTGCTTAG___TTAGGTTCAAACTAGTCCTCCGTCATTCTGCTATGTATGTATATGATAATGGTGTCGATTTCTGATATAGGTGGTTTTTCAATGTTTCTATCGTCATGTTTTCTGTTTAGCCAGAATGTTTCGATCGTCATGGTTTATGTTAAAGCCAGAATAAAATTAGCCGCTTGCAGTTC

Fln Alignment:

Contig706___MGSHAENGNGVEVV----------DPTDLTDIENGKPGYDKRTLPADWKFGVKLQNVMEESIYKYMLETFTRHREDEASKELWERTWNLTQRGEMMTLPDQVQFLRLMVKMSGAKKALEIGVFTGYSLLNIALALPSDGKVVAVDPGDDPKFGWPCFVKAGVADKVEIKKTTGLDYLDSLIQKGEKDCFDFAFVDADKVNYVNYHPRLMKLVRVGGVIIYDDTLWFGLVGGKDPHNLLKNDYMRTSLEGIKAINSMVANDPNLEVATVFMGYGVTVCYRTA
A9NT68_______________MGSHAENGNGVKVVKVSETEEEVFEPSDLTEIENGKPGYDNRTLPPDWKFGVKLQNVMEESIYKYMLETFTRHREHEASKELWERTWKLTQRGEMMKLPDQVQFLRLMVKMSGAKKALEIGVFTGYSLLNIALALPSDGKVVAVDPGEDPKFGWPCFVKAGVADKVEIKQTTGLEYLDSVVEKGEKDCFDFAFVDADKVNYVNYHPRLMKLVRVGGVIIYDDTLWFGLVGGKDPHNLLKNDYMRTSLEGIKAINAMVANDPNLEVATVFMGYGVTVCYRTA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1200		30		70	1.0
1501		75	25		1.0
1513	81		18		0.999994
1557	75	25			0.996473
1560	25	75			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain