SustainPineDB

Assembly Name: inia v1.0

UniGene Name: inia_v1.0_unigene20

Length: 2273 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>inia_v1.0_unigene20
GAGGTGAAATGGATCGCAGGAATCAATACGAGGGCGCGCTGATAATTTTACTGGTTGTGGCGGTGAATCTGATGACAGGAGCGGCGGAGAGGTTGTTAAGTGTGGGCGCTTCTCCAAAGACATTGAACCGCTCAGGAGACACTGCGAGGCTCACCCTTACTTGGACTGCAAATTCATCTGCCTCCTCTTCTGACATGGACTGGCTGGGGATTTACAATCCTCCAGATTCCGCAGATGATCATTTCATAGGTTATGTCCTGCTGTCTTCCTTCTGCCCAAACTGGGTGAAGGAGGAGGGTTCATGTTATCTGGATCTTCCTCTCATCAATCTGCGAAGGCCTTATGAGTTCCGTGTGTTTCGATGGGACAAGTCTGACATATCCAACACGACTCCAATGGACGAGGATCACAATCCCCTGCCCTCCACCGCCCATCTTCTGGCGAGGAGCGACCCCCTTAGTTTTCGCAATTTCAACGATCCAGCTCAGCTCCACCTGGCCTTCACCTCCAATCAGGATGAGATGCGTGTCATGTTCCTGACAAGCGATGACATAAAGAGCTATGCCAGATATGGGTTAGATGAGGGGAAGCTGAATAGCGTGGCAAGGGCTCAGTCCGTCACCTATACGCGCCCGGACATGTGCGATGAACCTGCTAACACAAGTTTTGGATGGAGGGATCCCGGGTATATTCATGATGCTGTAATGCAGGGACTGGAGCCAGGGAAGCGCTATTTTTATGAGGTCGGAAGCGATGAGGGTGGCTGGAGTTCGATTCAGAGTTTTGTATCTTTAGATAAAGATTCAGACGAAACTTTTGCATTCCTCTTTGGTGATTTGGGAGTGTCTGTACCCTACAAAACTTTTCTCTGGACCCAGGAAGAGAGCAAGCGTACAGTCAAATGGCTAAGGCGCGACCTTGAAGAGCTTGGGGATAAACCTACATTTATTTCTCATATTGGTGACATCAGCTATGCCAGAGGCTATGCATGGCTATGGGATGCATTCTTTACTCAGATTGAGCCTCTTGCATCCAAGGTTCCTTATCATGTATGCATGGGAAATCATGAGTATGACTGGCCATTACAGCCGTGGAAACCTGAATGGTCAACCAGATTGTATGGAACTGACGGAGGTGGTGAATGTGGGGTCCCTTACAGCTTAAAGTTTCAGATGCCCGGTGATTCTTCTTTTCCAACTGGAAATGCTGCCCCATCAACAAAAAATCTCTACTATTCATTTGACCTGGGAGTTGTACATTTCTTGTATATGTCCACTGAAACTAATTTTTACGAGGAAGTGATCAATATGCTTTCATAGAGCACGACCTGAAAAAGGTTGATAGAAACAAGACGCCATTTGTAGTATTTCAAGGTCACCGTCCAATGTATACCACTGACAATGCAGTAAGTGAACGGCCCCTACGAGAAAAAATGATTGAACACTTGGAACCTCTGCTAGTTAAGTATAGAGTCAACCTGGTCTTATGGGGCCATGTTCACAAGTATGAGAAGTTTTGTCCAATGAAAAACTTTTCATGTGGAAGCATGGACAGTGAAGCTGATCTTCCCATACATGTTGTAATTGGAATGGGTGGACAAGACTGGCAACCAATATGGGAACCTAGGCCTGATCACCCAACAGATCCTATCTTTCCACAACCTGTTAGATCTCTTTACCGAAGCAGCGAACTTGGTTATACAAGACTATATGCAACTAGGAAAACATTGACACTTTCCTACATTGGGAACCATGACGGACAGGTCCATGATGTTTTAGAAATACGTTTGAAAGGTATTTAGAAATCTTCTAACTGGATTTAGTTTATGAAGGCGGGCAGCTTATTCCTGGTTGGAGCTTTACTCGGTTTTATTGGTGGATACCAATTCTACTCCAAAAGAGACGTGTTCAACGGACAGGGCTGGAGAGCGTTGAGCATTTATAGATAGCATATAAGACGAAGATACCATGCTAGCATAACAAAAACCTACCAAAACAGAACAGGTTTTCGGGATGGGTACCTATTTATAATCTAGAAAAGAAACATGATCAGTGGACAGGGCTTAATGCTTATGAATCCTAATGCATATCATGCCATGAGAGCATGGAAGATAAAGTAAACTATATTACTATCCAAAAGCCATCAGAACCAATTAATAGACTGCAAATACTATGGTTATAACTTATAATGTAGCAGAGAAAAGCAAGTCAGTTGGCCACGCTGAAGTATTTTTATCAAATAATTCCTCTAATAGCTATAAAATTCTCTTAGCC

Ace file of the UniGene inia_v1.0_unigene20 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene42	47/49

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide pyrophosphatase/phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9RCW2_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	purple acid phosphatase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	71%
Blast2go	Riboflavin metabolism	00740		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	71%
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Flavin monooxygenase FMO	IPR000960	-	-
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACP9

Fln msg: your sequence is longer than subject: 437 - 314

Fln protein: MDRRNQYEGALIILLVVAVNLMTGAAERLLSVGASPKTLNRSGDTARLTLTWTANSSASSSDMDWLGIYNPPDSADDHFIGYVLLSSFCPNWVKEEGSCYLDLPLINLRRPYEFRVFRWDKSDISNTTPMDEDHNPLPSTAHLLARSDPLSFRNFNDPAQLHLAFTSNQDEMRVMFLTSDDIKSYARYGLDEGKLNSVARAQSVTYTRPDMCDEPANTSFGWRDPGYIHDAVMQGLEPGKRYFYEVGSDEGGWSSIQSFVSLDKDSDETFAFLFGDLGVSVPYKTFLWTQEESKRTVKWLRRDLEELGDKPTFISHIGDISYARGYAWLWDAFFTQIEPLASKVPYHVCMGNHEYDWPLQPWKPEWSTRLYGTDGGGECGVPYSLKFQMPGDSSFPTGNAAPSTKNLYYSFDLGVVHFLYMSTETNFYEEVINMLS*

Protein Length: 438

Fln nts: GAGGTGAA_-_ATGGATCGCAGGAATCAATACGAGGGCGCGCTGATAATTTTACTGGTTGTGGCGGTGAATCTGATGACAGGAGCGGCGGAGAGGTTGTTAAGTGTGGGCGCTTCTCCAAAGACATTGAACCGCTCAGGAGACACTGCGAGGCTCACCCTTACTTGGACTGCAAATTCATCTGCCTCCTCTTCTGACATGGACTGGCTGGGGATTTACAATCCTCCAGATTCCGCAGATGATCATTTCATAGGTTATGTCCTGCTGTCTTCCTTCTGCCCAAACTGGGTGAAGGAGGAGGGTTCATGTTATCTGGATCTTCCTCTCATCAATCTGCGAAGGCCTTATGAGTTCCGTGTGTTTCGATGGGACAAGTCTGACATATCCAACACGACTCCAATGGACGAGGATCACAATCCCCTGCCCTCCACCGCCCATCTTCTGGCGAGGAGCGACCCCCTTAGTTTTCGCAATTTCAACGATCCAGCTCAGCTCCACCTGGCCTTCACCTCCAATCAGGATGAGATGCGTGTCATGTTCCTGACAAGCGATGACATAAAGAGCTATGCCAGATATGGGTTAGATGAGGGGAAGCTGAATAGCGTGGCAAGGGCTCAGTCCGTCACCTATACGCGCCCGGACATGTGCGATGAACCTGCTAACACAAGTTTTGGATGGAGGGATCCCGGGTATATTCATGATGCTGTAATGCAGGGACTGGAGCCAGGGAAGCGCTATTTTTATGAGGTCGGAAGCGATGAGGGTGGCTGGAGTTCGATTCAGAGTTTTGTATCTTTAGATAAAGATTCAGACGAAACTTTTGCATTCCTCTTTGGTGATTTGGGAGTGTCTGTACCCTACAAAACTTTTCTCTGGACCCAGGAAGAGAGCAAGCGTACAGTCAAATGGCTAAGGCGCGACCTTGAAGAGCTTGGGGATAAACCTACATTTATTTCTCATATTGGTGACATCAGCTATGCCAGAGGCTATGCATGGCTATGGGATGCATTCTTTACTCAGATTGAGCCTCTTGCATCCAAGGTTCCTTATCATGTATGCATGGGAAATCATGAGTATGACTGGCCATTACAGCCGTGGAAACCTGAATGGTCAACCAGATTGTATGGAACTGACGGAGGTGGTGAATGTGGGGTCCCTTACAGCTTAAAGTTTCAGATGCCCGGTGATTCTTCTTTTCCAACTGGAAATGCTGCCCCATCAACAAAAAATCTCTACTATTCATTTGACCTGGGAGTTGTACATTTCTTGTATATGTCCACTGAAACTAATTTTTACGAGGAAGTGATCAATATGCTTTCATAG___AGCACGACCTGAAAAAGGTTGATAGAAACAAGACGCCATTTGTAGTATTTCAAGGTCACCGTCCAATGTATACCACTGACAATGCAGTAAGTGAACGGCCCCTACGAGAAAAAATGATTGAACACTTGGAACCTCTGCTAGTTAAGTATAGAGTCAACCTGGTCTTATGGGGCCATGTTCACAAGTATGAGAAGTTTTGTCCAATGAAAAACTTTTCATGTGGAAGCATGGACAGTGAAGCTGATCTTCCCATACATGTTGTAATTGGAATGGGTGGACAAGACTGGCAACCAATATGGGAACCTAGGCCTGATCACCCAACAGATCCTATCTTTCCACAACCTGTTAGATCTCTTTACCGAAGCAGCGAACTTGGTTATACAAGACTATATGCAACTAGGAAAACATTGACACTTTCCTACATTGGGAACCATGACGGACAGGTCCATGATGTTTTAGAAATACGTTTGAAAGGTATTTAGAAATCTTCTAACTGGATTTAGTTTATGAAGGCGGGCAGCTTATTCCTGGTTGGAGCTTTACTCGGTTTTATTGGTGGATACCAATTCTACTCCAAAAGAGACGTGTTCAACGGACAGGGCTGGAGAGCGTTGAGCATTTATAGATAGCATATAAGACGAAGATACCATGCTAGCATAACAAAAACCTACCAAAACAGAACAGGTTTTCGGGATGGGTACCTATTTATAATCTAGAAAAGAAACATGATCAGTGGACAGGGCTTAATGCTTATGAATCCTAATGCATATCATGCCATGAGAGCATGGAAGATAAAGTAAACTATATTACTATCCAAAAGCCATCAGAACCAATTAATAGACTGCAAATACTATGGTTATAACTTATAATGTAGCAGAGAAAAGCAAGTCAGTTGGCCACGCTGAAGTATTTTTATCAAATAATTCCTCTAATAGCTATAAAATTCTCTTAGCC

Fln Alignment:

Contig20___MDRRNQYEGXXXXXXXXXVNLMTGAAERLLSVGASPKTLNRSGDTARLTLTWTANSSASSSDMDWLGIYNPPDSADDHFIGYVLLSSFCPNWVKEEGSCYLDLPLINLRRPYEFRVFRWDKSDISNTTPMDEDHNPLPSTAHLLARSDPLSFRNFNDPAQLHLAFTSNQDEMRVMFLTSDDIKSYARYGLDEGKLNSVARAQSVTYTRPDMCDEPANTSFGWRDPGYIHDAVMQGLEPGKRYFYE
D5ACP9______________MGRRTKFEEELIIAFVVVVSLMIGAANGLLTVESSPKTLNRSGDNVTLTLTWTANSSSSSSDMDWLGIYNPPDSADEHFIGYILLSSFCPNWM--EGSCYVDLPLINLRRPYEFRVFRWDKSEISNRTPVDEAHNPLPSTTHLLARSDGVSFRNLNDPAQLHLAFTSNQDEMRVMFLTKDAIKSSVRYGLDENEMDRVAEARSVTYTRSEMCDAPANTSLGWMDPGYIHDAVMQGLEPGKRYFYQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1326	80		20		0.995493
1572		20		80	0.995493
1620		16		83	0.994512
1766		20		80	0.995493
1825	16		83		0.994512
1828	16		83		0.994512
1899		14		85	0.993533
2098	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain