SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene56175

Length: 173 nt

UniGene Fasta

>uagpf_v2_unigene56175
CGTCGTGACCTTGGCTGTCACTCATTGTTCTCCGTCTGAGAGGTGGCATGCAGATCTTTGTTAAAACCCTCACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCGGACACCATCGATAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATCCTCCTGACCAGCAGCGTC

Ace file of the UniGene uagpf_v2_unigene56175

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16065	1/2
SustainPine v2.0	sp_v2.0_unigene24777	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor sp\|P0CH05.1\|UBI2P_PETCR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor emb\|CAA45621.1\| polyubiquitin [Petroselinum crispum] emb\|CAA45622.1\|	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	polyubiquitin	-	-	98%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPR6

Fln msg: Distance to subject end: 54 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 55 - 252

Fln protein: PWLSLIVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILLTSSV

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTCTCCGTCTGAGAGGTGGCATGCAGATCTTTGTTAAAACCCTCACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCGGACACCATCGATAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATCCTCCTGACCAGCAGCGTC

Fln Alignment:

uagpf_mira_rep_c94362___SLIVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI
C0PPR6________________SFIRVRLTSDMLIFVITLTGEAITLVVATSDTIYDVKAKIQGKKGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain