SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene56120

Length: 686 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene56120

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16871	2/21
SustainPine v2.0	sp_v2.0_unigene61202	17/21
SustainPine v2.0	sp_v2.0_unigene61302	1/21

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH	-	-	7.0e-35	96%
FL-Next	sp=Ubiquitin; Avena sativa (Oat).	-	-	0.0	98%
Blast2go	ubiquitin	-	-	4.48416e-44	94%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
95	50	25		25	0.995533
96		25	25	50	0.995533
100		50		50	1.0
101	50	50			1.0
102	50			50	1.0
109	50	25			0.995533
110	75			25	0.996473
111		25	75		0.996473
112	25	25	50		0.995533
115	50	50			1.0
140		80	20		0.995493
143		80	20		0.995493
144	80			20	0.995493
150	80			20	0.995493
153	80			20	0.995493
154	80		20		0.995493
155	80			20	0.995493
156		20	80		0.995493
157	20		80		0.995493
160		20	80		0.995493
162	20			80	0.995493
247		87		12	0.992554
253		87	12		0.992554
257			87	12	0.992554
258		12		87	0.992554
259	12		87		0.992554
260		12	87		0.992554
262	87	12			0.992554
263	12		87		0.992554
281			16	83	0.999991
284			16	83	0.999991
289	75	16			0.99999
298	18		81		0.999994
501	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain