SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene56058

Length: 368 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene56058
CGTCGTGACCTTGGCTGTCACTCAATGGCCCATACAAGGTGTTGCAAAAGATAGGTACTATGGCATACAAATTGGAGCTTCCTGCAATTCCCAAGTGCACCCAGTTTTCCATGTGTCATGCTTAAAGAAGGTTATAGGTGACAAGATCCCAGTTCAAACAATATTGCCAAAACTTGATGAGGAAGGAAAATCATATTGGAACCTAAAGCAGTCAAAGAAACAAGAACTCGACAACTATGAAATCAATCAACTCCAAAGTATATCATCAAGTGGAAGACCTTACCTGTTGAAGATTCCACATGGGAGGATGAGAAGTTTTTACAGAAGCATCCATAACTACTCAAGTGTTGAGGACAACATTTTTTGAA

Ace file of the UniGene uagpf_v2_unigene56058 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24573	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	63%
Blast2go	retrotransposon unclassified	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Protein of unknown function DUF594	IPR007658	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5ASY8

Fln msg: Separated hits, possible frame ERROR between 83 and 89, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, your sequence is shorter than subject: 122 - 1384

Fln protein: S*PWLSLNGPYKVLQKIGTMAYKLELxxxSQVHPVFHVSCLKKVIGDKIPVQTILPKLDEEGKSYWNLKQSKKQELDNYEINQLQSISSSGRPYLLKIPHGRMRSFYRSIHNYSSVEDNIF*

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGCCCATACAAGGTGTTGCAAAAGATAGGTACTATGGCATACAAATTGGAGCTTCCxxxxxxTTCCCAAGTGCACCCAGTTTTCCATGTGTCATGCTTAAAGAAGGTTATAGGTGACAAGATCCCAGTTCAAACAATATTGCCAAAACTTGATGAGGAAGGAAAATCATATTGGAACCTAAAGCAGTCAAAGAAACAAGAACTCGACAACTATGAAATCAATCAACTCCAAAGTATATCATCAAGTGGAAGACCTTACCTGTTGAAGATTCCACATGGGAGGATGAGAAGTTTTTACAGAAGCATCCATAACTACTCAAGTGTTGAGGACAACATTTTTTGAA

Fln Alignment:

uagpf_mira_rep_c93939___GPYKVLQKIGTMAYKLELPxxSQVHPVFHVSCLKKVIGDKIPVQTILPKLDEEGK
A5ASY8________________GPYQIEQRIGKVAYKLNLPxxSKIHPIFHVSLLKKKLGEPNNTTVELPLTDDEGE

SNPs (tot: 3)

Position	A %	G %	T %	Probability
209	33		66	0.997476
254	66		33	0.997461
256	66	33		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain