SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene56006

Length: 416 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene56006
AAGTTGAGACAATTAAGACCTTGGGTCTGTTACAACCTTTAGCCATTCCAAGTCAACGTTGGGAGGAGGTATCAATGGATTTTATCACAATTTTACCCAAGTTTCAAGGAAAGAGTGTCATCATGGTGGTAGTTTATAGACTTACCAAGCATGCACACTTTTGTGTGTTATCTCACCCTTCTAAAGCCAGTACAATTGCTACTGCATTTATGGAAACAATTCAAAAGCTACATGGAAATCCAAAGATTATTGTAAGTGACAAAGATCTCATTTTCACTTGAAATTTTTAGACGAATTTTTTTCTTGTCTTGGTATTCAATTAGCTCATAACTCATCTTATCATCCTCAATCTGATGATCAGACTAAGATAGAGAGAAAATGTTTGGATCGATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene56006 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene83477	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI	-	-	1.0e-34	80%
FL-Next	tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Blast2go	pol protein integrase region	-	-	1.04593e-34	84%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9LHM4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 228 aas, your sequence is shorter than subject: 93 - 1499

Fln protein: VETIKTLGLLQPLAIPSQRWEEVSMDFITILPKFQGKSVIMVVVYRLTKHAHFCVLSHPSKASTIATAFMETIQKLHGNPKIIVSDKDLIFT*

Protein Length: 94

Fln nts: AAGTTGAGACAATTAAGACCTTGGGTCTGTTACAACCTTTAGCCATTCCAAGTCAACGTTGGGAGGAGGTATCAATGGATTTTATCACAATTTTACCCAAGTTTCAAGGAAAGAGTGTCATCATGGTGGTAGTTTATAGACTTACCAAGCATGCACACTTTTGTGTGTTATCTCACCCTTCTAAAGCCAGTACAATTGCTACTGCATTTATGGAAACAATTCAAAAGCTACATGGAAATCCAAAGATTATTGTAAGTGACAAAGATCTCATTTTCACTTGAAATTTTTAGACGAATTTTTTTCTTGTCTTGGTATTCAATTAGCTCATAACTCATCTTATCATCCTCAATCTGATGATCAGACTAAGATAGAGAGAAAATGTTTGGATCGATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c93762___GLLQPLAIPSQRWEEVSMDFITILPKFQGKSVIMVVVYRLTKHAHFCVLSHPSKASTIATAFMETIQKLHGNPKIIVSDKD
Q9LHM4________________GLLQPLPIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain