SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene56002

Length: 361 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene56002
CCATTCCTGTCATTGATGAATTACATGCAGAAATTTACTTCACCAAGTTGAATCTTCGTTCAGGATATCATCAAATAAGAATGAAGACTAAAGACATTCTAAAAATAGCATTTAGAACTCATGAGGGTCATTATGAATTTTTGGTCATGCCTTTTGGTCTTACCAATGCACTTTCTACCATTCAAGGTTTGATGAATTGCATTTTCAAAACCCTTAGAAAATTTTTGTTAGTATTTTTTGATGATATACTAATCTACAACAAGTCTTGGAAGGGTTATGTTCAACATGTTGATAGGGTGCTTAAACTATTGGAGGAGAAACAATTATATACGAAACCTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene56002 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23970	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	1.99965e-42	57%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	38%
Blast2go	ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	FMRFamide-related peptide-like	IPR002544	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: your sequence is shorter than subject: 114 - 142

Fln protein: IPVIDELHAEIYFTKLNLRSGYHQIRMKTKDILKIAFRTHEGHYEFLVMPFGLTNALSTIQGLMNCIFKTLRKFLLVFFDDILIYNKSWKGYVQHVDRVLKLLEEKQLYTKPE*

Protein Length: 115

Fln nts: CCATTCCTGTCATTGATGAATTACATGCAGAAATTTACTTCACCAAGTTGAATCTTCGTTCAGGATATCATCAAATAAGAATGAAGACTAAAGACATTCTAAAAATAGCATTTAGAACTCATGAGGGTCATTATGAATTTTTGGTCATGCCTTTTGGTCTTACCAATGCACTTTCTACCATTCAAGGTTTGATGAATTGCATTTTCAAAACCCTTAGAAAATTTTTGTTAGTATTTTTTGATGATATACTAATCTACAACAAGTCTTGGAAGGGTTATGTTCAACATGTTGATAGGGTGCTTAAACTATTGGAGGAGAAACAATTATATACGAAACCTGAGTGA___CAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c93756___IPVIDELHAEI----YFTKLNLRSGYHQIRMKTKDILKIAFRTHEGHYEFLVMPFGLTNALSTIQGLM-NCIFKTLRKFLLVFFDDILIYNKSWKGYVQHVDRVLKLLEEKQLY
P31843________________IPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIKHLRVVRESKEIF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain