SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene56001

Length: 709 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene56001 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23970	1/6
SustainPine v2.0	sp_v2.0_unigene24375	1/6
SustainPine v2.0	sp_v2.0_unigene24652	1/6
SustainPine v2.0	sp_v2.0_unigene24662	1/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	1.99965e-42	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	FMRFamide-related peptide-like	IPR002544	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
508		33		66	0.997452
510	33	33		33	0.997752
512	33		66		0.997452
517		50		50	1.0
518	50		50		1.0
522		25		75	0.996473
523			75	25	0.99649
528		50		50	1.0
529	75		25		0.996473
530	33		66		0.997452
531	25			75	0.996473
532	25	75			0.996473
541			50	50	1.0
546	25		75		0.996473
555		75		25	0.996473
556		33		66	0.997452
560		50		50	1.0
562	75		25		0.99649
565	75		25		0.996473
567		75		25	0.996473
579	66			33	0.997452
587	33		66		0.997452
588	66	33			0.997476
592	66		33		0.997452
606	66		33		0.997476
623	33		66		0.997452
631	66		33		0.997476
634		66		33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain