SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55973

Length: 395 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene55973
GTAGAGGACATCTCCCATGTTCCATATGCAAGTGTAGTCGGTATCCTGATGTACGCAATGTTCTGTACTAGACCAGACATTTCACATACAGTGGGAGTATTGAGCAATTTTATCTCAAAACTAGCAAAGGATCACTGGACAATAGTGAAGCATGTTTTTAGGTATTTGCGTGGCCCTAGTGATTATGGTTTGTGCTACCAAGGAATACCAAGATTGGAAAGAGTGTTAGATATTCATGGCTTTGTTGATGCAGACTGGGGTGGAGATCTGGATCAGAGAAGATCTCCAAGTGGGTATGTGTTTAACCTATTTGGAGGTGCAGTCATTTGGATGAGTAAGAAACAATTTGTAGTGACACTATCAACTACAGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene55973 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene82167	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL	-	-	72%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	72%
Blast2go	gag-pol polyprotein	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF862, eukaryotic	IPR008580	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 49 aas, your sequence is shorter than subject: 126 - 542

Fln protein: VEDISHVPYASVVGILMYAMFCTRPDISHTVGVLSNFISKLAKDHWTIVKHVFRYLRGPSDYGLCYQGIPRLERVLDIHGFVDADWGGDLDQRRSPSGYVFNLFGGAVIWMSKKQFVVTLSTTDE*

Protein Length: 127

Fln nts: GTAGAGGACATCTCCCATGTTCCATATGCAAGTGTAGTCGGTATCCTGATGTACGCAATGTTCTGTACTAGACCAGACATTTCACATACAGTGGGAGTATTGAGCAATTTTATCTCAAAACTAGCAAAGGATCACTGGACAATAGTGAAGCATGTTTTTAGGTATTTGCGTGGCCCTAGTGATTATGGTTTGTGCTACCAAGGAATACCAAGATTGGAAAGAGTGTTAGATATTCATGGCTTTGTTGATGCAGACTGGGGTGGAGATCTGGATCAGAGAAGATCTCCAAGTGGGTATGTGTTTAACCTATTTGGAGGTGCAGTCATTTGGATGAGTAAGAAACAATTTGTAGTGACACTATCAACTACAGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c93643___EDISHVPYASVVGILMYAMFCTRPDISHTVGVLSNFISKLAKDHWTIVKHVFRYLRGPSDYGLCYQGIPRLERVLDIHGFVDADWGGDLDQRRSPSGYVFNLFGGAVIWMSKKQFVVTLSTTD
Q9M5J7________________EDMSHVPYASAVGSLMYAMVCTRPDIAHAVGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain