SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55969

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene55969
TGCAATAAGTGTGGTAATAGCATGGTAGAAGACTAATCCATATACACCTCAACAAAATGGAGTTGCAGAAGAATGAACAAGACGTTGATGGGAAGGGCAAGAAGCATGCTCACTGGTGCCAGGTTAGGACAAGAATTTTAGGCAGAGGAATTGGATACTGCATGTTACAAGGTCAACAGGTCACCTCCATCAGCCTTGGAGGATAAGACTCCAGAAGAGGTATGGACTAGTAAGAAACCCTCTCTTTCACATCTGATGGTATTTGGATGTGATGCATATGTACATGTCCCAAAGGAGAAAAGAACAAAGTTGGATAGTGAATCTGAAAAGTGCATCTTTATTGGGTATAAGGATGGTTTAAAGGGTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene55969 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene83738	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein-like n=1 Tax=Solanum chilense RepID=Q9AU17_SOLCI	-	-	2.0e-25	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	gag-pol polyprotein	-	-	1.23065e-28	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR010256	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 61 aas, your sequence is shorter than subject: 123 - 407

Fln protein: CNKCGNSMVED*SIYTSTKWSCRRMNKTLMGRARSMLTGARLGQEF*AEELDTACYKVNRSPPSALEDKTPEEVWTSKKPSLSHLMVFGCDAYVHVPKEKRTKLDSESEKCIFIGYKDGLKG*

Protein Length: 124

Fln nts: TGCAATAAGTGTGGTAATAGCATGGTAGAAGACTAATCCATATACACCTCAACAAAATGGAGTTGCAGAAGAATGAACAAGACGTTGATGGGAAGGGCAAGAAGCATGCTCACTGGTGCCAGGTTAGGACAAGAATTTTAGGCAGAGGAATTGGATACTGCATGTTACAAGGTCAACAGGTCACCTCCATCAGCCTTGGAGGATAAGACTCCAGAAGAGGTATGGACTAGTAAGAAACCCTCTCTTTCACATCTGATGGTATTTGGATGTGATGCATATGTACATGTCCCAAAGGAGAAAAGAACAAAGTTGGATAGTGAATCTGAAAAGTGCATCTTTATTGGGTATAAGGATGGTTTAAAGGGTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c93627___RMNKTLMGRARSMLTGARLGQEF*AEELDTACYKVNRSPPSALEDKTPEEVWTSKKPSLSHLMVFGCDAYVHVPKEKRTKLDSESEKCIFIGYKDGLK
B8LKX7________________RKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain