SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55968

Length: 328 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene55968
CGTCGTGACCTTGGCTGTCACTCATGTTTGGACTTGTAAAGGTTCCATCACTAGGTAAGTCTGTGTACTATGTATCATTTATAGATGACTTCTCAAGGAATACATGGATATATTCCTTAAGAAAAAACCGAAGTCTTTGACAAATTTAAAGAATTTAAGGCTCTGGTGGAAAACCAAACAAGGAAGAAGATAAAGGCGCTGAGGACAGATAATGATGGAGAGTTTTACAATAAGGAATTTGAAGAATTCTGCAGGAAGTGTGGTATAGCACAACAGAAGACTACTCCATATACACCTCAGTAAATGAGTGACAGCCAAGGTCAAGACA

Ace file of the UniGene uagpf_v2_unigene55968 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene83499	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ	-	-	1.0e-29	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	gag-pol polyprotein	-	-	9.89962e-32	73%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 165 aas, your sequence is shorter than subject: 101 - 407

Fln protein: RRDLGCHSCLDL*RFHH*VSLCTMYHL*MTSQGIHGYIP*EKTEVFDKFKEFKALVENQTRKKIKALRTDNDGEFYNKEFEEFCRKCGIAQQKTTPYTPQ*

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTGGACTTGTAAAGGTTCCATCACTAGGTAAGTCTGTGTACTATGTATCATTTATAGATGACTTCTCAAGGAATACATGGATATATTCCTTAAGAAAAAACCGAAGTCTTTGACAAATTTAAAGAATTTAAGGCTCTGGTGGAAAACCAAACAAGGAAGAAGATAAAGGCGCTGAGGACAGATAATGATGGAGAGTTTTACAATAAGGAATTTGAAGAATTCTGCAGGAAGTGTGGTATAGCACAACAGAAGACTACTCCATATACACCTCAGTAAATGAGTGACAGCCAAGGTCAAGACA

Fln Alignment:

uagpf_mira_rep_c93626___SQGIHGYIP*EKTEVFDKFKEFKALVENQTRKKIKALRTDNDGEFYNKEFEEFCRKCGIAQQKTTPYTPQ
B8LKX7________________SRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain