SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55952

Length: 526 nt

UniGene Fasta

>uagpf_v2_unigene55952
CGTCGTGACCTTGGCTGTCACTCATGGATTTGTTGATGTAGACTGGGATGGAGATCTGGATCAGAGAAGATCTACAAGTGGGTATGTGTTTAACCTATTTGGAGGTGCAGTCAGTTGGATGAGTAAGAAACAATCTGTAGTGGAAATATCAACTACAAAGGCAGAATACATGGCAGCCACTCATGAAAGCAAGGAAGCAGTTTGGTTGCAGAGATTGTGTTCAAGTATGGGGTTAGTACAGGGAGCTATAAGGATAGATTGTGATAGCCAAAGTGAAATTTTCTTGGCAAAGAACCTTTTTTATCATTCAAATACAAAGCACATTGATGTTCAGTATCACTTTGTGAGGGATATGATAGAAGACAAAAAGGTGTTGTTGGTAAAGGTGGACACTTAGAAGAATACTGCAGATGCATTGACAAAATTTGTGAGCTTTGATATGTTCTCTTGGTGTAGAGAAATAATGGGCATTGCGGGGCTAGAAGAATGACTAAGCTCTCCCGTGGACACTTGTGGAAAGGAAACA

Ace file of the UniGene uagpf_v2_unigene55952

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24697	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL	-	-	78%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	68%
Blast2go	gag-pol polyprotein	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein of unknown function DUF789	IPR008507	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: your sequence is shorter than subject: 132 - 542

Fln protein: VVTLAVTHGFVDVDWDGDLDQRRSTSGYVFNLFGGAVSWMSKKQSVVEISTTKAEYMAATHESKEAVWLQRLCSSMGLVQGAIRIDCDSQSEIFLAKNLFYHSNTKHIDVQYHFVRDMIEDKKVLLVKVDT*

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGATTTGTTGATGTAGACTGGGATGGAGATCTGGATCAGAGAAGATCTACAAGTGGGTATGTGTTTAACCTATTTGGAGGTGCAGTCAGTTGGATGAGTAAGAAACAATCTGTAGTGGAAATATCAACTACAAAGGCAGAATACATGGCAGCCACTCATGAAAGCAAGGAAGCAGTTTGGTTGCAGAGATTGTGTTCAAGTATGGGGTTAGTACAGGGAGCTATAAGGATAGATTGTGATAGCCAAAGTGAAATTTTCTTGGCAAAGAACCTTTTTTATCATTCAAATACAAAGCACATTGATGTTCAGTATCACTTTGTGAGGGATATGATAGAAGACAAAAAGGTGTTGTTGGTAAAGGTGGACACTTAG___AAGAATACTGCAGATGCATTGACAAAATTTGTGAGCTTTGATATGTTCTCTTGGTGTAGAGAAATAATGGGCATTGCGGGGCTAGAAGAATGACTAAGCTCTCCCGTGGACACTTGTGGAAAGGAAACA

Fln Alignment:

uagpf_mira_rep_c93568___HGFVDVDWDGDLDQRRSTSGYVFNLFGGAVSWMSKKQSVVEISTTKAEYMAATHESKEAVWLQRLCSSMGLVQGAIRIDCDSQSEIFLAKNLFYHSNTKHIDV
Q9M5J7________________HGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQVVRLDCEIQSAIFMAKNPAYDSKTNHIDV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
200	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain