SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55939

Length: 368 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene55939
AAAGCATATTTGAGGATTTCTTGGGTTGACAGGGTATTATCACACGCTTTTTAAGAATTATGGGGGAATAGAAGTGCCTCTAACAAAAATATTGAAGGAAGATGCATTTTGTTGGACTCCAGAAGCAACTAAGTAATTTGAACGTATTTAAGAGGTAATGTGCCAAGCACTGGCCTTAGTTGCACCAAAATTCACAAAAATCTTTATTATGGAATGTGATGGCTTAGGAAATGGAACTGATGTTGTTTTGATCCAAGAAGTAAGACCCATTGCTTTTGAAAGTCATATAATCAAGGGAATTTTTTTACACATACCTATTTATTAGAAGGAAATGTTGGAAATATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene55939 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene76473	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC	-	-	8.0e-20	44%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	40%
Blast2go	ac069160_10gypsy ty3 element	-	-	7.99339e-23	57%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 108 - 158

Fln protein: KHI*GFLGLTGYYHTLFKNYGGIEVPLTKILKEDAFCWTPEATK*FERI*EVMCQALALVAPKFTKIFIMECDGLGNGTDVVLIQEVRPIAFESHIIKGIFLHIPIY*

Protein Length: 109

Fln nts: AAAGCATATTTGAGGATTTCTTGGGTTGACAGGGTATTATCACACGCTTTTTAAGAATTATGGGGGAATAGAAGTGCCTCTAACAAAAATATTGAAGGAAGATGCATTTTGTTGGACTCCAGAAGCAACTAAGTAATTTGAACGTATTTAAGAGGTAATGTGCCAAGCACTGGCCTTAGTTGCACCAAAATTCACAAAAATCTTTATTATGGAATGTGATGGCTTAGGAAATGGAACTGATGTTGTTTTGATCCAAGAAGTAAGACCCATTGCTTTTGAAAGTCATATAATCAAGGGAATTTTTTTACACATACCTATTTATTAG___AAGGAAATGTTGGAAATATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c93505___GFLGLTGYYHTLFKNYGGIEVPLTKILKEDAFCWTPEATK*FERI*EVMCQALALVAPKFTKIFI
P92523________________GFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain