SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55902

Length: 324 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene55902
AGAGGCGGTGGATACTGCATGTTACCTGGTCAACAAGTCATCTTCATCTGCGTTGGAGGATAAGACTCCACAAGAAGTATGGACTGGTAAGAAACCCTCTCCTTCACATATGAGGGTATTTGGATGTGATGCATATGTACATGTTCCAAAGGAGAAACGAACCAAGTTGGATAGTAAATCTGAAAAGTTCATCTTTATTGGGTATAAGGATGGTTTAAAGGGTTATAAGCTTTGGAACCCAGTCACAAGGAACGTCGTGTACAGCTCAGATGTGGTGTTCAGAGAGGTAAAATATGTTATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene55902 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene83737	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCE4_CUCME	-	-	3.0e-28	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	gag-pol polyprotein	-	-	3.28507e-35	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	3.28507e-35	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3		IPR010256	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 35 aas, your sequence is shorter than subject: 102 - 407

Fln protein: EAVDTACYLVNKSSSSALEDKTPQEVWTGKKPSPSHMRVFGCDAYVHVPKEKRTKLDSKSEKFIFIGYKDGLKGYKLWNPVTRNVVYSSDVVFREVKYVIE*

Protein Length: 103

Fln nts: AGAGGCGGTGGATACTGCATGTTACCTGGTCAACAAGTCATCTTCATCTGCGTTGGAGGATAAGACTCCACAAGAAGTATGGACTGGTAAGAAACCCTCTCCTTCACATATGAGGGTATTTGGATGTGATGCATATGTACATGTTCCAAAGGAGAAACGAACCAAGTTGGATAGTAAATCTGAAAAGTTCATCTTTATTGGGTATAAGGATGGTTTAAAGGGTTATAAGCTTTGGAACCCAGTCACAAGGAACGTCGTGTACAGCTCAGATGTGGTGTTCAGAGAGGTAAAATATGTTATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c93385___EAVDTACYLVNKSSSSALEDKTPQEVWTGKKPSPSHMRVFGCDAYVHVPKEKRTKLDSKSEKFIFIGYKDGLKGYKLWNPVTRNVVYSSDVVFRE
B8LKX7________________EAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain