SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55882

Length: 476 nt

UniGene Fasta

>uagpf_v2_unigene55882
CGTCGTGACCTTGGCTGTCACTCAATAAGGAAGCTGCCCTTCCAGCGTCTCGTGAGAGAAATTGCTCAGGACTTCAAGACGGATCTGAGGTTCCAGTCCTCTGCCGTGGCGTCGTGCCCTTGGCTGTGAGTCATATCTCGTGGGTCTCTTCGAGGACACTAACCTGTGCGCCATACATGCGAAGAGGGTCACTATTATGCCCAAAGATATTCAGCTGGCTCGCCGCATTCGTGGAGAGAGGGCTTAATATTTCTGTAGTTTTCACAATTTCGCAATAATACCAATGGTGTGTTTTCACACCAATCTTGTCTTCTTAGGTTTGTTCATCCATAGTTTCTATTTCTTGATTTGTGTCTGTACATAGCAAAGCTTATCGGGGCGCTATGTGTTTTAATTTTTATTCATCCCAATGTATGCACATGCCAATTTTTCGCAGTTGTTCTTCTTTGCATGTGTCAAACCTTCATGTGTCTTTC

Ace file of the UniGene uagpf_v2_unigene55882

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24283	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Histone H3 n=2 Tax=Pediculus humanus corporis RepID=E0V960_PEDHC	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	histone h3	-	-	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	99%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	99%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H3	IPR000164	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQH4

Fln msg: Separated hits, possible frame ERROR between 114 and 128, your sequence is shorter than subject: 83 - 136

Fln protein: RRDLGCHSIRKLPFQRLVREIAQDFKTDLRFQSSAVAxxxxxxESYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAGGAAGCTGCCCTTCCAGCGTCTCGTGAGAGAAATTGCTCAGGACTTCAAGACGGATCTGAGGTTCCAGTCCTCTGCCGTGGCGTCxxxxxxxxxxxxxxxTGAGTCATATCTCGTGGGTCTCTTCGAGGACACTAACCTGTGCGCCATACATGCGAAGAGGGTCACTATTATGCCCAAAGATATTCAGCTGGCTCGCCGCATTCGTGGAGAGAGGGCTTAATATTTCTGTAGTTTTCACAATTTCGCAATAATACCAATGGTGTGTTTTCACACCAATCTTGTCTTCTTAGGTTTGTTCATCCATAGTTTCTATTTCTTGATTTGTGTCTGTACATAGCAAAGCTTATCGGGGCGCTATGTGTTTTAATTTTTATTCATCCCAATGTATGCACATGCCAATTTTTCGCAGTTGTTCTTCTTTGCATGTGTCAAACCTTCATGTGTCTTTC

Fln Alignment:

uagpf_mira_rep_c93306___IRKLPFQRLVREIAQDFKTDLRFQSSAVASxxxxxESYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
C0PQH4________________IRKLPFQRLVREIAQDFKTDLRFQSSAVAAxxxxxEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain