SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55614

Length: 306 nt

UniGene Fasta

>uagpf_v2_unigene55614
CGTCGTGACCTTGGCTGTCACTCATCTTTATACAATTTTATCACCATGGCCAATCCGTCGTGATCTTTGCTTTTTCTCAGGTCTTATTGCTGGTTCTATCTACGATTGGGAAGCAGAGAAACAGCAATTGTCTCGGTACCCTTCGCACAGTTTAATGGCTAAAGGAGCTTACAATCACTCCTCCAAATGCGAGGGTGCAGAGTGTTTTTTCTCACTTATTTGCTAATGGTTGGCGTCTGTATTATTGGGGTAATTTTGAGTCTGGTTCTTAGTTATCGGACCAAAATTGTTTACAGTACTATGTAT

Ace file of the UniGene uagpf_v2_unigene55614

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6248	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	major facilitator protein [Arabidopsis thaliana] gb\|AAF03444.1\|AC010797_20 unknown protein [Arabidopsis thaliana] gb\|AAF14842.1\|AC011664_24 unknown protein [Arabidopsis thaliana] gb\|AAM91600.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15407.1\| unknown	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	major facilitator protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 16 aas, your sequence is shorter than subject: 75 - 626

Fln protein: VVTLAVTHLYTILSPWPIRRDLCFFSGLIAGSIYDWEAEKQQLSRYPSHSLMAKGAYNHSSKCEGAECFFSLIC*

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTATACAATTTTATCACCATGGCCAATCCGTCGTGATCTTTGCTTTTTCTCAGGTCTTATTGCTGGTTCTATCTACGATTGGGAAGCAGAGAAACAGCAATTGTCTCGGTACCCTTCGCACAGTTTAATGGCTAAAGGAGCTTACAATCACTCCTCCAAATGCGAGGGTGCAGAGTGTTTTTTCTCACTTATTTGCTAATGGTTGGCGTCTGTATTATTGGGGTAATTTTGAGTCTGGTTCTTAGTTATCGGACCAAAATTGTTTACAGTACTATGTAT

Fln Alignment:

uagpf_mira_rep_c92214___FSGLIAGSIYDWEAEKQQLSRYPSHSLMAKGAY----NHSSKCEGAECF
B8LRH5________________FSGLLAGILYDIEAAKSHKVNARPYPVLLSGIYPSELEDSNNCVGAHCY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain