SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55552

Length: 220 nt

UniGene Fasta

>uagpf_v2_unigene55552
CGTCGTGACCTTGGCTGTCACTCAGTTGGAGTTGGCTGGAAACGCTGCTCGTGACAACAAGAAGACCAGAATCATACCTCGCCATATTCAGTTGGCAGTCAGAAATGACGACGAATTGGGGAAACTTTTGGGGAAAGTGACCATCGCTAGCGGTGGTGTGCTGCCAAACATTCATCAGGTTCTCCTCCCCAAGAAGGTTGCTGAGAAATCAGAGAAGGCT

Ace file of the UniGene uagpf_v2_unigene55552

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6107	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI	-	-	1.0e-24	66%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	histone h2a	-	-	6.37348e-30	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleosome assembly	GO:0006334	Biological Process	6.37348e-30	95%
Blast2go	DNA binding	GO:0003677	Molecular Function	6.37348e-30	95%
Blast2go	nucleosome	GO:0000786	Cellular Component	6.37348e-30	95%
Blast2go	nucleus	GO:0005634	Cellular Component	6.37348e-30	95%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H2A	IPR002119	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAB1

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 73 - 143

Fln protein: VVTLAVTQLELAGNAARDNKKTRIIPRHIQLAVRNDDELGKLLGKVTIASGGVLPNIHQVLLPKKVAEKSEKA

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGAGTTGGCTGGAAACGCTGCTCGTGACAACAAGAAGACCAGAATCATACCTCGCCATATTCAGTTGGCAGTCAGAAATGACGACGAATTGGGGAAACTTTTGGGGAAAGTGACCATCGCTAGCGGTGGTGTGCTGCCAAACATTCATCAGGTTCTCCTCCCCAAGAAGGTTGCTGAGAAATCAGAGAAGGCT

Fln Alignment:

uagpf_mira_rep_c91957___LAVTQLELAGNAARDNKKTRIIPRHIQLAVRNDDELGKLLGKVTIASGGVLPNIHQVLLPKKVAEKSEKA
D5AAB1________________LAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDDELGKLLGKVTIASGGVLPNIHQVLLPKKVAEKAEKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain