SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55535

Length: 380 nt

UniGene Fasta

>uagpf_v2_unigene55535
CGTCGTGACCTTGGCTGTCACTCAATTTTTGAGTTCTATGAAAAACCTGAAAGTTCTAATAGTAATCAATTATGGCTCTAAGAGAGCCGTCGTGACTTGTCTGTCAGTTTATCTTCACTTACTCAGCTCAAGGCTATTCGCTTGGAGAGGTTGCATGTGCCCGCACTTCACGAGCATTCTAAAGTCTTGCAAAACTTGGAGAAGCTATCTTTGAGCTTATGTGAAGGGCTTGGAAGTATGTCACGGTTCAACAACATCCAGTCGAGCTTAAAGCTTCCAAGCATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGAGGAGTTGCCCCCTGGTATTTGTGACATGTCTTCAGTTGAAAATTGGACTATCACTAATTG

Ace file of the UniGene uagpf_v2_unigene55535

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26913	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	leucine rich repeat family expressed	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Powdery mildew resistance protein, RPW8 domain	IPR008808	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKS2

Fln msg: Distance to subject end: 129 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 99 - 244

Fln protein: ESRRDLSVSLSSLTQLKAIRLERLHVPALHEHSKVLQNLEKLSLSLCEGLGSMSRFNNIQSSLKLPSMLDFNLDHCCDLEELPPGICDMSSVENWTITN

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGAGTTCTATGAAAAACCTGAAAGTTCTAATAGTAATCAATTATGGCTCTAAGAGAGCCGTCGTGACTTGTCTGTCAGTTTATCTTCACTTACTCAGCTCAAGGCTATTCGCTTGGAGAGGTTGCATGTGCCCGCACTTCACGAGCATTCTAAAGTCTTGCAAAACTTGGAGAAGCTATCTTTGAGCTTATGTGAAGGGCTTGGAAGTATGTCACGGTTCAACAACATCCAGTCGAGCTTAAAGCTTCCAAGCATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGAGGAGTTGCCCCCTGGTATTTGTGACATGTCTTCAGTTGAAAATTGGACTATCACTAATTG

Fln Alignment:

uagpf_mira_rep_c91861___TQLKAIRLERLHVPALHEHSKVLQNLEKLSLSLCEGLGSMSRFNNIQSSLKLPSMLDFNLDHCCDLEELPPGICDMSSVENWTITN
A9NKS2________________TQLKTMRLERLIVPPLHEHSKVVQNLEKLSLSLCEGLGNMSRFNGTQSNLKLPIMLDFNMDHCCDLEELPLGICDMSSVQKWSITN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain