SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55526

Length: 358 nt

UniGene Fasta

>uagpf_v2_unigene55526
AGAATTTGTATGCAGGTAATTTGTATACCGAGTTAAAACCTACAATATTAACTCTCATTATTATACAAGTGATTCAAGATTTCTACTTGGAGAACATTGATTAGTGCTCCCATAGAATTTGTATGCAGGTAAAATCCAACACCATGTTGCTTAGGTCAAAGACGATAGCACTCCAGCAACGGAAGGAGATCATTCCTAATCTTCCAGATGATATAGCTCGAACTTGTTTGCTTAGAGTGCCCTACAAATGGCACTCTACGCTCAAACTGGTGTGCAGAAAATGGAAAGAGATAGTGAGCGACCCCAAGTTCTACAAGGACAGAAAGAGCACTGGAACAGGGGAACAGTTGATATGTAT

Ace file of the UniGene uagpf_v2_unigene55526

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26805	4/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box/kelch-repeat protein [Arabidopsis thaliana] sp\|O80582.2\|FBK46_ARATH RecName: Full=F-box/kelch-repeat protein At2g44130 gb\|AAL75886.1\| At2g44130/F6E13.26 [Arabidopsis thaliana] gb\|AAC23417.2\| expressed protein [Arabidopsis thaliana] gb\|AAM70552.1\| At	-	-	6.0e-36	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	f-box-like protein	-	-	0.0	52%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRS6

Fln msg: Distance to subject end: 293 aas, your sequence is shorter than subject: 78 - 353

Fln protein: MQVKSNTMLLRSKTIALQQRKEIIPNLPDDIARTCLLRVPYKWHSTLKLVCRKWKEIVSDPKFYKDRKSTGTGEQLIC

Protein Length: 79

Fln nts: AGAATTTGTATGCAGGTAATTTGTATACCGAGTTAAAACCTACAATATTAACTCTCATTATTATACAAGTGATTCAAGATTTCTACTTGGAGAACATTGATTAGTGCTCCCATAGAATTTGT_-_ATGCAGGTAAAATCCAACACCATGTTGCTTAGGTCAAAGACGATAGCACTCCAGCAACGGAAGGAGATCATTCCTAATCTTCCAGATGATATAGCTCGAACTTGTTTGCTTAGAGTGCCCTACAAATGGCACTCTACGCTCAAACTGGTGTGCAGAAAATGGAAAGAGATAGTGAGCGACCCCAAGTTCTACAAGGACAGAAAGAGCACTGGAACAGGGGAACAGTTGATATGTAT

Fln Alignment:

uagpf_mira_rep_c91817___IPNLPDDIARTCLLRVPYKWHSTLKLVCRKWKEIVSDPKFYKDRKSTGTGEQLIC
B8LRS6________________IPNLPHEIVRECLLRVNYNSHDNLKAVCRNWETMLTSPLFYEDRKISGTSEQFIC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
121		20	80		0.995499
128	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain