SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55484

Length: 347 nt

UniGene Fasta

>uagpf_v2_unigene55484
CGTCGTGACCTTGGCTGTCACTCAGTTTTGTGTTGAAAGTTTAGTGCAAGAAAAATGGCCGTGGGAGGGTTTGCCGCCCCTGGAGGGTCTACGACTGTGGAATTCGAGGCCCGCATAACGGTTCATGTCGTCGTAACTTGTATCATCGCTGCAAGCGGCGGGTTAATGTTTGGCTACGATATAGGAATTTCAGGCGGAGTGACTGGCATGGATGACTTTCTCGTAAAATTCTTCCCCGTGGTCGCGCGCAAAAAGCACGAGGTGAAGGAAACGATTATTGCAAGTACGATAATCAAAGATTGCAGCTCTTTACTTCATCTCTGTACTTAGCCGGTCTGGTCGCGACA

Ace file of the UniGene uagpf_v2_unigene55484

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene76397	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hexose transporter n=2 Tax=Vitis vinifera RepID=Q3L7K6_VITVI	-	-	9.0e-27	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	hexose transporter	-	-	1.87861e-26	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	high-affinity hydrogen:glucose symporter activity	GO:0005358	Molecular Function	1.87861e-26	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.87861e-26	75%

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLP1

Fln msg: Overlapping hits, possible frame ERROR between 270 and 225, Distance to subject end: 431 aas, your sequence is shorter than subject: 98 - 529

Fln protein: MAVGGFAAPGGSTTVEFEARITVHVVVTCIIAASGGLMFGYDIGISGGVTGMDDFLxxxxxxxxxxxxxxxxxDYCKYDNQRLQLFTSSLYLAGLVAT

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTGTGTTGAAAGTTTAGTGCAAGAAAA_-_ATGGCCGTGGGAGGGTTTGCCGCCCCTGGAGGGTCTACGACTGTGGAATTCGAGGCCCGCATAACGGTTCATGTCGTCGTAACTTGTATCATCGCTGCAAGCGGCGGGTTAATGTTTGGCTACGATATAGGAATTTCAGGCGGAGTGACTGGCATGGATGACTTTCTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATTATTGCAAGTACGATAATCAAAGATTGCAGCTCTTTACTTCATCTCTGTACTTAGCCGGTCTGGTCGCGACA

Fln Alignment:

uagpf_mira_rep_c91621___MAVGGFAAPGGSTTVEFEARITVHVVVTCIIAASGGLMFGYDIGISGGVTGMDDFLVxxxxxxxxxxxxxxxNDYCKYDNQRLQLFTSSLYLAGLVAT
B8LLP1________________MPAAGFAAPMAPGAVEFEARITPYVIMTCIIAASGGLMFGYDVGISGGVTSMDDFLExxxxxxxxxxxxxxxNAYCKYDNQGLQLFTSSLYLAGLVAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain