SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55419

Length: 431 nt

UniGene Fasta

>uagpf_v2_unigene55419
CGTCGTGACCTTGGCTGTCACTCGTGACCTTGGTGTGACTGAATTTTCGCCGAGCAGAAGCCTTGGTTTTAAATTTTTCTGCGGGCAGCTACTTTCTTCCTTCGTTTTTAAGTTCTATGACAAAGCTTAAAGTCCTCATAGTACTCAATTATGGATCAAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATTCGCTTGGAGAGGTTGAATGTGCCCTCACTTCAAGAGCAGAGCAAACTCTTTCAGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCGAGGTTTAACACCACCCAGTTTCGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATTCGC

Ace file of the UniGene uagpf_v2_unigene55419

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15954	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	cc-nbs-lrr protein	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 138 aas, your sequence is shorter than subject: 143 - 835

Fln protein: S*PWLSLVTLV*LNFRRAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQFRLKLPIMLDFNLDHCCDLDELPSDICDIR

Protein Length: 144

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGACCTTGGTGTGACTGAATTTTCGCCGAGCAGAAGCCTTGGTTTTAAATTTTTCTGCGGGCAGCTACTTTCTTCCTTCGTTTTTAAGTTCTATGACAAAGCTTAAAGTCCTCATAGTACTCAATTATGGATCAAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATTCGCTTGGAGAGGTTGAATGTGCCCTCACTTCAAGAGCAGAGCAAACTCTTTCAGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCGAGGTTTAACACCACCCAGTTTCGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATTCGC

Fln Alignment:

uagpf_mira_rep_c91339___LNFRRAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQFRLKLPIMLDFNLDHCCDLDELPSDICDI
B8LKC3________________MNFRQAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain