SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55392

Length: 237 nt

UniGene Fasta

>uagpf_v2_unigene55392
CGTCGTGACCTTGGCTGTCACTCAATCTCAGGCTGACTGTGCAGTTTTGATCGTCGTGTCCTTGGCTGGATGTTTTGAAGCTGGTATTTCCAAGGACGGTCAGACGAGAGAACATGCCCTATTGGCGTTCACCTTGGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGGAAGTATCTTCTTA

Ace file of the UniGene uagpf_v2_unigene55392

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15917	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-alpha n=1 Tax=Arabidopsis thaliana RepID=F4HUA0_ARATH	-	-	98%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	elongation factor 1-alpha	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	99%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	99%
Blast2go	mitochondrion	GO:0005739	Cellular Component	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%
Blast2go	nucleus	GO:0005634	Cellular Component	99%
Blast2go	plasma membrane	GO:0005886	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTP0

Fln msg: Distance to subject end: 270 aas, your sequence is shorter than subject: 78 - 447

Fln protein: VVTLAVTQSQADCAVLIVVSLAGCFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSS

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCAGGCTGACTGTGCAGTTTTGATCGTCGTGTCCTTGGCTGGATGTTTTGAAGCTGGTATTTCCAAGGACGGTCAGACGAGAGAACATGCCCTATTGGCGTTCACCTTGGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGGAAGTATCTTCTTA

Fln Alignment:

uagpf_mira_rep_c91182___SQADCAVLIVVSLAGCFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSS
C0PTP0________________SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain