SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55364

Length: 371 nt

UniGene Fasta

>uagpf_v2_unigene55364
CGTCGTGACCTTGGCTGTCACTCAGAGCTTTTTAGCTAGTACTTCACCGGATCTGCTGGTTTCTTTTATTCTTTCAGCTGCTTTAATAACGTTTTGCTGGTTTCCTTTTGGCATGGAGCTGTCATTTTTCAGAATTGCTAGTGTCTTGATTACTTTATACTCTTCACCTGGTTGCTGGTATTCTTAGGGTATTGAGGGGGCTTCTTAGGGTTTGACCTGTCATGCTTCGTTTTGCAGCCTGATGGACAAATGCCGAGTGACAAGACCGTTGGCGGTGGAGATGATGCATTCAACACATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGCCAACTGTCATTGA

Ace file of the UniGene uagpf_v2_unigene55364

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene82394	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: LOW QUALITY PROTEIN: tubulin alpha-1C chain-like n=1 Tax=Macaca mulatta RepID=UPI0001D53D82	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	tubulin alpha-7 chain	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQU1

Fln msg: Distance to subject end: 374 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 40 - 450

Fln protein: MPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVI

Protein Length: 41

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGCTTTTTAGCTAGTACTTCACCGGATCTGCTGGTTTCTTTTATTCTTTCAGCTGCTTTAATAACGTTTTGCTGGTTTCCTTTTGGCATGGAGCTGTCATTTTTCAGAATTGCTAGTGTCTTGATTACTTTATACTCTTCACCTGGTTGCTGGTATTCTTAGGGTATTGAGGGGGCTTCTTAGGGTTTGACCTGTCATGCTTCGTTTTGCAGCCTGATGGACAA_-_ATGCCGAGTGACAAGACCGTTGGCGGTGGAGATGATGCATTCAACACATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGCCAACTGTCATTGA

Fln Alignment:

uagpf_mira_rep_c91006___LQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVI
C0PQU1________________IQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain