SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55339

Length: 568 nt

UniGene Fasta

>uagpf_v2_unigene55339
CGTCGTGACCTTGGCTGTCACTCAATAGTCATAATAATACCGGATGCTCGGGTTGTAGTCCCCAGTGTTGTCTTCACTTCGTTGTAGGCTTGCTCTGCTTATCCTCACTTCGCCTTTGTTCATCTGGGCAGAGTGGTGTGTCGTGATCTTCTTTGTTGAGAGCAGAATGGATCCAGGGTGGTATTTGTTGCTGTTTGTTGTGGTTTTTTGCAGGTGTGCAGAAGCCATTGAATATGCTAAGTACAAGGACCCATCTCAGTCCATCACTGCTCGCGTGGATGACTTGCTGGCTCGGATGACTTTGGAAGAGAAGATCGGACAGATGACACAGATTGAAAGAACAGTGGCCACCGCAGATGTTATGAAAAATTACTACATTGGGAGTGTACTGAGCGGAGGAGGTAGCGCTCCTGCACCCATGGCATCTCCGACCACATGGATGAACATGGTGGATGAGCTCCAGAAGGGTGCCATGTCGACTCGTCTTCAGATCCCTATGATATATGGCATTGATGCTGTGCATGGCCACAACAATGTCTATGGGGCTACTATCTTCCCTCACAATGTA

Ace file of the UniGene uagpf_v2_unigene55339

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7110	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9SD66_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	lysosomal beta glucosidase-like	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	83%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	83%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	83%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	83%
Blast2go	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	83%
Blast2go	beta-glucosidase activity	GO:0008422	Molecular Function	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	0.0	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: Distance to subject end: 493 aas, your sequence is shorter than subject: 134 - 631

Fln protein: MDPGWYLLLFVVVFCRCAEAIEYAKYKDPSQSITARVDDLLARMTLEEKIGQMTQIERTVATADVMKNYYIGSVLSGGGSAPAPMASPTTWMNMVDELQKGAMSTRLQIPMIYGIDAVHGHNNVYGATIFPHNV

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGTCATAATAATACCGGATGCTCGGGTTGTAGTCCCCAGTGTTGTCTTCACTTCGTTGTAGGCTTGCTCTGCTTATCCTCACTTCGCCTTTGTTCATCTGGGCAGAGTGGTGTGTCGTGATCTTCTTTGTTGAGAGCAGA_-_ATGGATCCAGGGTGGTATTTGTTGCTGTTTGTTGTGGTTTTTTGCAGGTGTGCAGAAGCCATTGAATATGCTAAGTACAAGGACCCATCTCAGTCCATCACTGCTCGCGTGGATGACTTGCTGGCTCGGATGACTTTGGAAGAGAAGATCGGACAGATGACACAGATTGAAAGAACAGTGGCCACCGCAGATGTTATGAAAAATTACTACATTGGGAGTGTACTGAGCGGAGGAGGTAGCGCTCCTGCACCCATGGCATCTCCGACCACATGGATGAACATGGTGGATGAGCTCCAGAAGGGTGCCATGTCGACTCGTCTTCAGATCCCTATGATATATGGCATTGATGCTGTGCATGGCCACAACAATGTCTATGGGGCTACTATCTTCCCTCACAATGTA

Fln Alignment:

uagpf_mira_rep_c90906___SRMDPGWYLLLFVVVFCRCAEAIEYAKYKDPSQSITARVDDLLARMTLEEKIGQMTQIERTVATADVMKNYYIGSVLSGGGSAPAPMASPTTWMNMVDELQKGAMSTRLQIPMIYGIDAVHGHNNVYGATIFPHNV
A9NUD1________________SRMNSGWYLLLSVVVLCKCAGAIGYAKYKDPSQPIIARVEDLLARMTVEEKIGQMTQIERSDATADVMKKYYIGSVLSGGGSVPAPKASPATWINMVDDLQKGAMSTRLQIPMMYGIDAVHGHNNAYGATMFPHNI

SNPs (tot: 5)

Position	C %	G %	T %	Probability
180	33	66		0.997467
183	33	66		0.997461
188	33		66	0.997476
189	33		66	0.997476
335		66	33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain