SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55316

Length: 379 nt

UniGene Fasta

>uagpf_v2_unigene55316
CGTCGTGACCTTGGCTGTCACTCAGGTCTGGAGGCTAGAGTTGAGGAGAGGGATGGATACTGGGTTCTCAAAGAGGAATTCAGGGCTGGAATCAACCCTCAGGAGAAGGTGAGATTCCCAATTCAGATTAAGTTGCAGAGGGAGCCCATGAAATTGTTCATGGAGAATGAGATTGAAGAACTTGCAAAGAAGCCCTTGGCTGAAATTGAGAGTGAGAAGGTTAATAAGGATGATATAGATGTACGCCTGAAGTGGTTAGGTCTCTTTCACCGAAGAAAGCATCACTATGGGAGATTCATGATGAGACTTAAGCTTCCAAATGGAGTGACTACCAGTCTCCAAACTCGATATTTGGCAAGCGTGATTCAACAATATGGAT

Ace file of the UniGene uagpf_v2_unigene55316

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene82109	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ferredoxin--nitrite reductase, chloroplastic n=1 Tax=Betula pendula RepID=NIR_BETPN	-	-	1.4013e-45	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	nitrite reductase	-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	response to nitrate	GO:0010167	Biological Process	85%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%
Blast2go	apoplast	GO:0048046	Cellular Component	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	NADH:cytochrome b5 reductase (CBR)	IPR001834	-	-
Sma3	Rubredoxin-type fold	IPR004039	-	-
Sma3	Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like	IPR005117	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Nitrite/sulphite reductase 4Fe-4S domain	IPR006067	-	-
Sma3	Oxidoreductase, FAD-binding domain	IPR008333	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ90

Fln msg: STOP codon was not found. Distance to subject end: 73 aas,

Fln protein: RRDLGCHSGLEARVEERDGYWVLKEEFRAGINPQEKVRFPIQIKLQREPMKLFMENEIEELAKKPLAEIESEKVNKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSLQTRYLASVIQQYG

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCTGGAGGCTAGAGTTGAGGAGAGGGATGGATACTGGGTTCTCAAAGAGGAATTCAGGGCTGGAATCAACCCTCAGGAGAAGGTGAGATTCCCAATTCAGATTAAGTTGCAGAGGGAGCCCATGAAATTGTTCATGGAGAATGAGATTGAAGAACTTGCAAAGAAGCCCTTGGCTGAAATTGAGAGTGAGAAGGTTAATAAGGATGATATAGATGTACGCCTGAAGTGGTTAGGTCTCTTTCACCGAAGAAAGCATCACTATGGGAGATTCATGATGAGACTTAAGCTTCCAAATGGAGTGACTACCAGTCTCCAAACTCGATATTTGGCAAGCGTGATTCAACAATATGGAT

Fln Alignment:

uagpf_mira_rep_c90755___SGLEARVEERDGYWVLKEEFRAGINPQEK
A9NQ90________________SRLEPRVEERDGYWVLKEEFRAGINPQEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain