SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55260

Length: 408 nt

UniGene Fasta

>uagpf_v2_unigene55260
CGTCGTGACCTTGGCTGTCACTCAGGTGAGTATGTTTTTCTTCTTTGTGCCTTTCGGGGCTTCAATTATTGTTCTTGCTTTTATGAGAGATAAAGGGTGGCCAATAATGGTGTCTAATGTGGGCGCAGTGCCAAGGAATTTTCGGTTACTGGAAGAACTTGAGAGGGGAGAGAAAGGAATAGGCGATGGAAGCGTCAGCTATGGAATGGACGATAGCGATGATATATACATGCGGTCATGGACTGGTACAATAATTGGTCCTCACAATTCGGTGCATGATGGGCGAATTTATCAATTAAAGCTATTCTGTGATAAGGATTATCCCGAGAAGCCTCCCAATGTAGGATTTTGTTCTCGGGTCAACATGACTTGTGTTAATCAGGAGACTGGACGGGTTGATCCAAAGCA

Ace file of the UniGene uagpf_v2_unigene55260

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene78575	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme E2 variant 1C n=3 Tax=Eukaryota RepID=D3PJZ2_9MAXI	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ubiquitin-conjugating enzyme spm2	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	postreplication repair	GO:0006301	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	UBC13-MMS2 complex	GO:0031372	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTX0

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 125 - 146

Fln protein: MFFFFVPFGASIIVLAFMRDKGWPIMVSNVGAVPRNFRLLEELERGEKGIGDGSVSYGMDDSDDIYMRSWTGTIIGPHNSVHDGRIYQLKLFCDKDYPEKPPNVGFCSRVNMTCVNQETGRVDPK

Protein Length: 126

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGAGT_-_ATGTTTTTCTTCTTTGTGCCTTTCGGGGCTTCAATTATTGTTCTTGCTTTTATGAGAGATAAAGGGTGGCCAATAATGGTGTCTAATGTGGGCGCAGTGCCAAGGAATTTTCGGTTACTGGAAGAACTTGAGAGGGGAGAGAAAGGAATAGGCGATGGAAGCGTCAGCTATGGAATGGACGATAGCGATGATATATACATGCGGTCATGGACTGGTACAATAATTGGTCCTCACAATTCGGTGCATGATGGGCGAATTTATCAATTAAAGCTATTCTGTGATAAGGATTATCCCGAGAAGCCTCCCAATGTAGGATTTTGTTCTCGGGTCAACATGACTTGTGTTAATCAGGAGACTGGACGGGTTGATCCAAAGCA

Fln Alignment:

uagpf_mira_rep_c90419___VPRNFRXXXXXXRGEKGIGDGSVSYGMDDSDDIYMRSWTGTIIGPHNSVHDGRIYQLKLFCDKDYPEKPPNVGFCSRVNMTCVNQETGRVDPK
A9NTX0________________VPRNFRLLEELERGEKGIGDGSVSYGMDDSDDIYMRSWTGTIIGPHNSVHDGRIYQLKLFCDKDYPEKAPTVRFCSRVNMTCVNQETGRVEPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain