SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55253

Length: 327 nt

UniGene Fasta

>uagpf_v2_unigene55253
CGTCGTGACCTTGGCTGTCACTCATTGCAAAAGAGGATTTGTTCAATTCATATATGAACCTATTAAGCAAATTGTCGTTATTTGTCTGTGACTCAAGGATAAGTTGTGGCCCATGTTGCAGAAATTGGGAGTTGTAATGAAAAGTGACGAGAAGGAGCTGGTTGCAAAAGCACTCATGAAGCGTGTCATGCAAACCTGGCTACCTGCAAGTAGTGCTTTACTTGAAATGATGATTTTCCATCTTCCTTCTCCAGCGAAGGCACAGAGATATCGTGTGGAAAACTTGTATGAAGGACCTCTTGATGATGTATATGCAACTGCAATAAG

Ace file of the UniGene uagpf_v2_unigene55253

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21540	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 2 n=32 Tax=Magnoliophyta RepID=EF2_BETVU	-	-	89%
FL-Next	sp=Elongation factor 2; Beta vulgaris (Sugar beet).	-	-	75%
Blast2go	elongation factor ef-2	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	96%
Blast2go	copper ion binding	GO:0005507	Molecular Function	96%
Blast2go	cytosol	GO:0005829	Cellular Component	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	96%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	96%
Blast2go	chloroplast	GO:0009507	Cellular Component	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23755

Fln msg: Distance to subject end: 475 aas, your sequence is shorter than subject: 108 - 843

Fln protein: VVTLAVTHCKRGFVQFIYEPIKQIVVICL*LKDKLWPMLQKLGVVMKSDEKELVAKALMKRVMQTWLPASSALLEMMIFHLPSPAKAQRYRVENLYEGPLDDVYATAI

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGCAAAAGAGGATTTGTTCAATTCATATATGAACCTATTAAGCAAATTGTCGTTATTTGTCTGTGACTCAAGGATAAGTTGTGGCCCATGTTGCAGAAATTGGGAGTTGTAATGAAAAGTGACGAGAAGGAGCTGGTTGCAAAAGCACTCATGAAGCGTGTCATGCAAACCTGGCTACCTGCAAGTAGTGCTTTACTTGAAATGATGATTTTCCATCTTCCTTCTCCAGCGAAGGCACAGAGATATCGTGTGGAAAACTTGTATGAAGGACCTCTTGATGATGTATATGCAACTGCAATAAG

Fln Alignment:

uagpf_mira_rep_c90385___CKRGFVQFIYEPIKQIVVICL*-LKDKLWPMLQKLGVVMKSDEKELVAKALMKRVMQTWLPASSALLEMMIFHLPSPAKAQRYRVENLYEGPLDDVYATAI
O23755________________CKRGFVQFCYEPIKQIIAACMNDQKDKLLAHVTKLGIQMKTEEKDLMGRPLMKRVMQTWLPASSALLEMMIHHLPSPATAQRYRVENLYEGPMDDVYATAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain