SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55232

Length: 395 nt

UniGene Fasta

>uagpf_v2_unigene55232
CGTCGTGACCTTGGCTGTCACTCAAGATTTGCAGTGACCTAATTATCGGTCTCGCTATTGCTATTTCTGTTTCTTCCCTTCAATTGTTTCGCACTGCATTGTATCGCCAGGTCGCGAGATCGACCCTCGGTGGAGCTGAACTGGCCGGCCAGTAACACTTGCAGCCAGACGCTCCATTGAATCTTCCCCCCTCGAGCAGACGCTCCATTGAATCTTCCCCCCTCGAGCACGAGCTATTGCGATCTATCGGAAAGATGGGCAAGGGACCTGGATTGTTTTCCAACATCGGGAAGAAGGCCAGAGATCTTCTCACGAAGGATTACAGCTATGACCAGAAGTTTGCTGTGGCTACATACAGTGATGATGGGTTGGGTATTACATCAACTGGCATGAAC

Ace file of the UniGene uagpf_v2_unigene55232

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24092	1/5
SustainPine v2.0	sp_v2.0_unigene80453	4/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Porin/voltage-dependent anion-selective channel protein n=1 Tax=Populus trichocarpa RepID=B9H6N6_POPTR	-	-	6.0e-24	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	voltage-dependent anion-selective	-	-	8.44142e-42	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of anion transport	GO:0044070	Biological Process	8.44142e-42	77%
Blast2go	regulation of seed germination	GO:0010029	Biological Process	8.44142e-42	77%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	8.44142e-42	77%
Blast2go	response to cold	GO:0009409	Biological Process	8.44142e-42	77%
Blast2go	aerobic respiration	GO:0009060	Biological Process	8.44142e-42	77%
Blast2go	voltage-gated anion channel activity	GO:0008308	Molecular Function	8.44142e-42	77%
Blast2go	cell wall	GO:0005618	Cellular Component	8.44142e-42	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	8.44142e-42	77%
Blast2go	nucleolus	GO:0005730	Cellular Component	8.44142e-42	77%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	8.44142e-42	77%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	8.44142e-42	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.44142e-42	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porin, eukaryotic type	IPR001925	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEE9

Fln msg: Distance to subject end: 229 aas, your sequence is shorter than subject: 47 - 276

Fln protein: MGKGPGLFSNIGKKARDLLTKDYSYDQKFAVATYSDDGLGITSTGMN

Protein Length: 48

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTTGCAGTGACCTAATTATCGGTCTCGCTATTGCTATTTCTGTTTCTTCCCTTCAATTGTTTCGCACTGCATTGTATCGCCAGGTCGCGAGATCGACCCTCGGTGGAGCTGAACTGGCCGGCCAGTAACACTTGCAGCCAGACGCTCCATTGAATCTTCCCCCCTCGAGCAGACGCTCCATTGAATCTTCCCCCCTCGAGCACGAGCTATTGCGATCTATCGGAAAG_-_ATGGGCAAGGGACCTGGATTGTTTTCCAACATCGGGAAGAAGGCCAGAGATCTTCTCACGAAGGATTACAGCTATGACCAGAAGTTTGCTGTGGCTACATACAGTGATGATGGGTTGGGTATTACATCAACTGGCATGAAC

Fln Alignment:

uagpf_mira_rep_c90295___MGKGPGLFSNIGKKARDLLTKDYSYDQKFAVATYSDDGLGITSTGMN
D5AEE9________________MGKGPGLFSNIGKKARDLLTKDYSHDQKFAVTTYSEDGLGITSTGMN

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
76		80		20	0.995505
77		20	20	60	0.992572
81		80	20		0.9955
83			20	80	0.995498
84	20	80			0.995496
85	80	20			0.995496
86	80	20			0.995496
90			25	75	0.996473
91		25		75	0.996473
93		75	25		0.996473
94			75	25	0.996473
99		25	75		0.996473
100	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain