SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55133

Length: 349 nt

UniGene Fasta

>uagpf_v2_unigene55133
CGTCGTGACCTTGGCTGTCACTCAGGAGGTCTTATTTGGCTGCAGTCTCCTCAGCATTTTACTTGTTTCTCTATGCCACATTCTATTTCTTCGTGAGCTTGGCTGTCTGACCTTGTTTCTGGAATTTTATATTTTGGCTACATGACCATCATGTCATACTCATTTTTTGTTTTGACCGGCACAATAGGTTTCTATGCATGCCTTTGGTTTGTGCGGACAATATACTCATCAGTGAAGATTGACTGAGGCTCTGCATGCAGCTGCCATTTTTCAGAGGGGTCGTTTACTCATCAGTGAAGATTGACTGGGGCTCTGCATGCAGCTGCTATTTTTCAGAGGGGCCGTTTAA

Ace file of the UniGene uagpf_v2_unigene55133

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16314	19/20

Source	Descriptions	Term	Type	Identity
AutoFact	Endosomal P24A protein, putative n=1 Tax=Ricinus communis RepID=B9STR3_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	endosomal p24a protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	cellular zinc ion homeostasis	GO:0006882	Biological Process	87%
Blast2go	cellular copper ion homeostasis	GO:0006878	Biological Process	87%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	87%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Fibrillarin	IPR000692	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Protein of unknown function DUF914, eukaryotic	IPR009262	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3		IPR017442	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC25

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 82 - 370

Fln protein: RRDLGCHSGGLIWLQSPQHFTCFSMPHSISS*AWLSDLVSGILYFGYMTIMSYSFFVLTGTIGFYACLWFVRTIYSSVKID*

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAGGTCTTATTTGGCTGCAGTCTCCTCAGCATTTTACTTGTTTCTCTATGCCACATTCTATTTCTTCGTGAGCTTGGCTGTCTGACCTTGTTTCTGGAATTTTATATTTTGGCTACATGACCATCATGTCATACTCATTTTTTGTTTTGACCGGCACAATAGGTTTCTATGCATGCCTTTGGTTTGTGCGGACAATATACTCATCAGTGAAGATTGACTGA___GGCTCTGCATGCAGCTGCCATTTTTCAGAGGGGTCGTTTACTCATCAGTGAAGATTGACTGGGGCTCTGCATGCAGCTGCTATTTTTCAGAGGGGCCGTTTAA

Fln Alignment:

uagpf_mira_rep_c89740___LSDLVSGILYFGYMTIMSYSFFVLTGTIGFYACLWFVRTIYSSVKID
D5AC25________________ITKLVSGILYFGYMTIISYAFFVLTGTIGFYACFWFVRKIYSSVKID

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
94			50	50	1.0
98		50	50		1.0
99		50		50	1.0
100	50		50		1.0
102		50	50		1.0
105			50	50	1.0
109	50	50			1.0
112	50			50	1.0
116	66	33			0.995533
117	33	33		33	0.997753
118		25	50	25	0.998762
119	33	66			0.997452
120	25			75	0.996483

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain