SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55077

Length: 368 nt

UniGene Fasta

>uagpf_v2_unigene55077
CGTCGTGACCTTGGCTGTCACTCATCCTCGTGTCTGCCTTACGAGAATCAGAGGCAAATCCTAGAAAATATTGTTCTATGTGGTGGTGACCTTGTCTGTCTGGTTTTGAAGATCGTTTTCAAAAGGAAGCAATTCTAGCATCATCAGTCCGTCCTGCACTTGTAAAGAGAACATGTTGAGGAATTCAGCTTGGATTGGAGGTGCTATCTTGGCCAAAGCGGTCTTCCTCCAGAATCAACATATCACAAAGGCAGAGTATGACGAATCTGGGCCAACTATCATTCATAGGAAATGCTTCTAAAATATCAATTTATCACTCTTATGCATACAAAAGTTGTTATTTTTCATTGTGTTGGATATCATGTTGA

Ace file of the UniGene uagpf_v2_unigene55077

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21659	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	actin-related protein 7 [Arabidopsis thaliana] sp\|Q8L4Y5.1\|ARP7_ARATH RecName: Full=Actin-related protein 7 gb\|AAM53247.1\|AF507915_1 actin-related protein 7 [Arabidopsis thaliana] gb\|AAM20512.1\| actin -like protein [Arabidopsis thaliana] tpg\|DAA00028.1\| T	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	actin related protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	80%
Blast2go	anatomical structure morphogenesis	GO:0009653	Biological Process	80%
Blast2go	floral organ abscission	GO:0010227	Biological Process	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-like	IPR004000	-	0.0	-
Sma3	Actin, conserved site	IPR004001	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMN7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 100 - 244

Fln protein: VVTLAVTHPRVCLTRIRGKS*KILFYVVVTLSVWF*RSFSKGSNSSIISPSCTCKENMLRNSAWIGGAILAKAVFLQNQHITKAEYDESGPTIIHRKCF*

Protein Length: 101

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTCGTGTCTGCCTTACGAGAATCAGAGGCAAATCCTAGAAAATATTGTTCTATGTGGTGGTGACCTTGTCTGTCTGGTTTTGAAGATCGTTTTCAAAAGGAAGCAATTCTAGCATCATCAGTCCGTCCTGCACTTGTAAAGAGAACATGTTGAGGAATTCAGCTTGGATTGGAGGTGCTATCTTGGCCAAAGCGGTCTTCCTCCAGAATCAACATATCACAAAGGCAGAGTATGACGAATCTGGGCCAACTATCATTCATAGGAAATGCTTCTAA___AATATCAATTTATCACTCTTATGCATACAAAAGTTGTTATTTTTCATTGTGTTGGATATCATGTTGA

Fln Alignment:

uagpf_mira_rep_c89417___SAWIGGAILAKAVFLQNQHITKAEYDESGPTIIHRKCF
A9NMN7________________SVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
166		33		66	0.997464
169	66		33		0.997467
171	66	33			0.997467
172		33	66		0.997464
173	66			33	0.997464
175	66		33		0.997476
176	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain