SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene55045

Length: 639 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene55045

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6603	7/8
SustainPine v2.0	sp_v2.0_unigene81670	1/8

Source	Descriptions	Term	Type	Identity
AutoFact	Type IIIa membrane protein cp-wap13 n=1 Tax=Vigna unguiculata RepID=O24548_VIGUN	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	alpha- -glucan-protein synthase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycogenin glucosyltransferase.	EC:2.4.1.186	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	91%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	91%
Blast2go	glycogenin glucosyltransferase activity	GO:0008466	Molecular Function	91%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	91%
Blast2go	plasmodesma	GO:0009506	Cellular Component	91%
Blast2go	cell wall	GO:0005618	Cellular Component	91%
Blast2go	extracellular region	GO:0005576	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha-1,4-glucan-protein synthase, UDP-forming	IPR004901	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
155		33		66	0.997467
157			66	33	0.997461
160	66			33	0.997461
161		66	33		0.997461
163		33	66		0.997461
165	66			33	0.997461
178		66		33	0.997476
281			75	25	0.996479
282		80	20		0.995498
283	60		20	20	0.992567
284	80			20	0.995497
285		20		80	0.995497
287		80		20	0.995497
288			40	60	1.0
291	40	60			1.0
305	75	25			0.996473
346	25	75			0.996473
362	25		75		0.996473
374		14		85	0.993534
376			85	14	0.993534
377	85	14			0.993534
378			14	85	0.993534
383		14	85		0.993534
390	83	16			0.994512
394	83	16			0.994512
395	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain