SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54992

Length: 509 nt

UniGene Fasta

>uagpf_v2_unigene54992
CGTCGTGACCTTGGCTGTCACTCAGCAGGAAAGGGAGATGCGCAGAAAAATGGAATATTATCGAAGGCAAGAGGTGGTGAGGTTGCTTTCACTTAAGGAAGAGGAAGAAGCCCGCAAGCGTGAGGAGGAGGAAAGAAAACGCAAACAGGATGCAGAATGGAGAGCCAAGCTGGATGAGATTGCTGAAAAGCAGAAGCAGCGTGAAAGGGAGCTGGAGGAGAAGGAGAGGCTACGAAAAGAAGCTTTGATCAAAGAGGAACCAAGAGTTTCAAAAACCCTCAGAGCCAAGTACAAACAAATTTGTTCCCCGAGCTCTGCGCAAGGCGACTGAATCTGCTGGCACTGAAGCAGATACTGATAGGTGGCGCCGTGGAGATCGGCAAACAAATGTTGATGGCAGAGATGGCCTCCCCGCTAGACAACGTGAAGCAGATGTGCCAGCGAGGGATAAGTATGCCCCTCCACGTAAATATGAGCCTTCGCAGTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene54992

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12676	5/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translation initiation factor eIF-3 subunit 10 [Arabidopsis thaliana] sp\|Q9LD55.1\|EIF3A_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName:	-	-	2.0e-29	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	protein	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	81%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	81%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADZ5

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 84 aas, your sequence is shorter than subject: 162 - 286

Fln protein: S*PWLSLSRKGRCAEKWNIIEGKRW*GCFHLRKRKKPASVRRRKENANRMQNGEPSWMRLLKSRSSVKGSWRRRRGYEKKL*SKRNQEFQKPSEPSTNKFVPRALRKATESAGTEADTDRWRRGDRQTNVDGRDGLPARQREADVPARDKYAPPRKYEPSQ*

Protein Length: 163

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCAGGAAAGGGAGATGCGCAGAAAAATGGAATATTATCGAAGGCAAGAGGTGGTGAGGTTGCTTTCACTTAAGGAAGAGGAAGAAGCCCGCAAGCGTGAGGAGGAGGAAAGAAAACGCAAACAGGATGCAGAATGGAGAGCCAAGCTGGATGAGATTGCTGAAAAGCAGAAGCAGCGTGAAAGGGAGCTGGAGGAGAAGGAGAGGCTACGAAAAGAAGCTTTGATCAAAGAGGAACCAAGAGTTTCAAAAACCCTCAGAGCCAAGTACAAACAAATTTGTTCCCCGAGCTCTGCGCAAGGCGACTGAATCTGCTGGCACTGAAGCAGATACTGATAGGTGGCGCCGTGGAGATCGGCAAACAAATGTTGATGGCAGAGATGGCCTCCCCGCTAGACAACGTGAAGCAGATGTGCCAGCGAGGGATAAGTATGCCCCTCCACGTAAATATGAGCCTTCGCAGTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c88867___LRKRKKPASVRRRKENANRMQNGEPSWMRLLKSRSSVKGSWRRRRGYEKKL*S----KRNQEFQKPSEPSTNKFVPRALRKATESAGTEADTDRWRRGDRQTNVDGRDGLP-ARQREADVPARDKYAPP-RKYEP
D5ADZ5________________LIKLKEEEEARKREEE-ERKRKQDAEWKAKLDEMTEKQKQRERELEEKERLRKEALIKEEPRVSRPTEPVPNKFVPRAMRKAAESAGTEADNDRWRRGDRQTHVDGRDGLPIPRQREADVPARDKYAPPSRKYEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain