SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54971

Length: 496 nt

UniGene Fasta

>uagpf_v2_unigene54971
CGTCGTGACCTTGGCTGTCACTCACAAAAAGCTATGGAAGACACTCAAAACCCACCAGGCAAATAAAACAGCTTCTCGGACATTTGGCGCTCTGGATCCAGTGCGTCGTGACCTTGGCTGTCACTCAACTTGGATACAATCTATGTCTCTGGGTGGCAGTGTTCTTCCACTCACACGTCCACAAATGAACCAGGCCCTGATCTTGCGGACTATCCCTATGACACTGTCCCTAACAAAGTGGAGCACCTCTTCTTTGCCCAGCAATATCACGATAGAAAACAGAGGGAGGCTAGAATGAGTATGAGCAGAGAAGAGAAGGCTAGGACACCTCATATTGACTACCTCAGGCCCATCATCGCAGATGGAGACACTGGTTTTGTGGGACAACTGCAACAGTTAAGCTCTGTAAGCTCTTTGTAGAAAGGGGTGCAGCAGGCGTGCACATTGAGGATCAGGCCTCTGTGCCAAAAAGTGTGGTCACATGGCTGGCAAAGTC

Ace file of the UniGene uagpf_v2_unigene54971

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4488	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	Isocitrate lyase n=1 Tax=Pinus taeda RepID=Q41084_PINTA	-	-	90%
FL-Next	sp=Isocitrate lyase; Pinus taeda (Loblolly pine).	-	-	94%
Blast2go	isocitrate lyase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isocitrate lyase.	EC:4.1.3.1	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	91%
Blast2go	Metabolic pathways	01100		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	91%
Blast2go	glyoxylate cycle	GO:0006097	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	isocitrate lyase activity	GO:0004451	Molecular Function	91%
Blast2go	glyoxysome	GO:0009514	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Isocitrate lyase/phosphorylmutase	IPR000918	-	-
Sma3	Isocitrate lyase	IPR006254	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q41084

Fln msg: Separated hits, possible frame ERROR between 106 and 130, and overlapping frame ERROR between 378 and 375, Distance to subject end: 353 aas, your sequence is shorter than subject: 165 - 573

Fln protein: VVTLAVTHKKLWKTLKTHQANKTASRTFGALDPVxxxxxxxxxLDTIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREEKARTPHIDYLRPIIADGDxxxxGTTATVKLCKLFVERGAAGVHIEDQASVPKSVVTWLAK

Protein Length: 166

Fln nts: CGTCGTGACCTTGGCTGTCACTCACAAAAAGCTATGGAAGACACTCAAAACCCACCAGGCAAATAAAACAGCTTCTCGGACATTTGGCGCTCTGGATCCAGTGCGxxxxxxxxxxxxxxxxxxxxxxxxCTTGGATACAATCTATGTCTCTGGGTGGCAGTGTTCTTCCACTCACACGTCCACAAATGAACCAGGCCCTGATCTTGCGGACTATCCCTATGACACTGTCCCTAACAAAGTGGAGCACCTCTTCTTTGCCCAGCAATATCACGATAGAAAACAGAGGGAGGCTAGAATGAGTATGAGCAGAGAAGAGAAGGCTAGGACACCTCATATTGACTACCTCAGGCCCATCATCGCAGATGGAGACACxxxxxxxxxTGGGACAACTGCAACAGTTAAGCTCTGTAAGCTCTTTGTAGAAAGGGGTGCAGCAGGCGTGCACATTGAGGATCAGGCCTCTGTGCCAAAAAGTGTGGTCACATGGCTGGCAAAGTC

Fln Alignment:

uagpf_mira_rep_c88770___QANKTASRTFGALDPVRxxxxxxxxLDTIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREEKARTPHIDYLRPIIADGDTGxCGTTATVKLCKLFVERGAAGVHIEDQASVPK
Q41084________________QANKTASRTFGALDPVQxxxxxxxxLDTIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPHIDYLRPIIADGDTGxGGTTATVKLCKLFVERGAAGVHIEDQASVTK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
225		25		75	0.996477
230		75	25		0.996481
232	75		25		0.996479
235	75	25			0.996478
236	66			33	0.997452
237	60	20		20	0.99255
240		16	83		0.994514
241		20	80		0.995493
242	60			40	1.0
249		83		16	0.994516
250			20	80	0.995493
251			20	80	0.995493
255		20		80	0.995493
256	20		80		0.995493
258		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain